View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_24 (Length: 370)
Name: NF18398_low_24
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 16743032 - 16742678
Alignment:
| Q |
1 |
ataaatcaaaaccctaatcaattccactgaaaaggtggtacaacccatatgggaggtgccatacctttgaagtaagatttataagggcaatgaacaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16743032 |
ataaatcaaaaccctaatcaattccactgaaaaggtggtacaacccatatgggaggtgccatacctttgaagtaagatttataagggcaatgaacaccaa |
16742933 |
T |
|
| Q |
101 |
agcttccatgctttatgttatatattcccatatcaaaaggacctctaggataaggaaccggtacttcgttataataattatcagaatagtaaatagaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16742932 |
agcttccatgctttatgttatatattcccatatcaaaaggacctctaggataaggaaccggtacttcgttataataattatcagaatagtaaatagaatc |
16742833 |
T |
|
| Q |
201 |
cttttgcagataacttgagaaatatgaagttgatactgacattgaatcgccatcacccacaaataaaacattgtctcctaaactctcaagtttcgacaaa |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16742832 |
cttttgtagataacttgagaaatatgaagttgatactgacattgaatcgccatcacccacaaataaaacattgtctcctaaactctcaagtttcgacaaa |
16742733 |
T |
|
| Q |
301 |
tgcataagcttatcacctttgtcattcaattccaacttaaatacatgtaaagaat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16742732 |
tgcataagcttatcacctttgtcattcaattccaacttaaatacatgtaaagaat |
16742678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 16724635 - 16724281
Alignment:
| Q |
1 |
ataaatcaaaaccctaatcaattccactgaaaaggtggtacaacccatatgggaggtgccatacctttgaagtaagatttataagggcaatgaacaccaa |
100 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16724635 |
ataaatcaaaaccctaatcaattcccctgaaaaggtggtacaacccatatgggaggtgccatacctttgaagtaagatttataagggcaatgaacaccaa |
16724536 |
T |
|
| Q |
101 |
agcttccatgctttatgttatatattcccatatcaaaaggacctctaggataaggaaccggtacttcgttataataattatcagaatagtaaatagaatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16724535 |
agcttccatgctttatgttatatattcccatatcaaaaggacctctaggataaggaaccggtacttcgttataataattatcagaatagtaaatagaatc |
16724436 |
T |
|
| Q |
201 |
cttttgcagataacttgagaaatatgaagttgatactgacattgaatcgccatcacccacaaataaaacattgtctcctaaactctcaagtttcgacaaa |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16724435 |
cttttgtagataacttgagaaatatgaagttgatactgacattgaatcgccatcacccacaaataaaacattgtctcctaaactctcaagtttcgacaaa |
16724336 |
T |
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| Q |
301 |
tgcataagcttatcacctttgtcattcaattccaacttaaatacatgtaaagaat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16724335 |
tgcataagcttatcacctttgtcattcaattccaacttaaatacatgtaaagaat |
16724281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 28408398 - 28408485
Alignment:
| Q |
252 |
atcacccacaaataaaacattgtctcctaaactctcaagtttcgacaaatgcataagcttatcacctttgtcattcaattccaactta |
339 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||| | ||| ||| ||||||||| ||| ||| || ||||||||||||| |
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| T |
28408398 |
atcacccaaaaataaaacattgtctcccaaactatcaagtcttaacatatgtataagcttaccacttttaagatccaattccaactta |
28408485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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