View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18398_low_25 (Length: 353)
Name: NF18398_low_25
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_25 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 45148145 - 45147808
Alignment:
| Q |
16 |
agacagattatgtcatgaacctaattgaaagaaacaaactactacattacaatgcaaaatggtcagaaaggatttttgagaccattatccctaattttac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45148145 |
agacagattatgtcatgaacctaattgaaagaaacaaactactacattacaatgcaaaatggtcagaaaggatttttgagaccattatccctaattttac |
45148046 |
T |
|
| Q |
116 |
aagagaacaggtaggaagtgggagatacgtgcaactttatgcggaatacaatgtctcgtcaacttctatggcttgtccaccccattgctgtcaacttcta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45148045 |
aagagaacaggtaggaagtgggagatacgtgcaactttatgcggaatacaatgtctcgtcaacttctatggcttgtccaccccattgctgtcaacttcta |
45147946 |
T |
|
| Q |
216 |
cggtttgtccaccccattgctgcacccgtgcagatgtattatccacctacaattgagaagagtcatatgattgaaagcagtgagaatctctaaattcatt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45147945 |
cggtttgtccaccccattgctgcacccgtgcagatgtattatccacctacaattgagaagagtcaaatgattgaaagcagtgagaatctctaaattcatt |
45147846 |
T |
|
| Q |
316 |
caagctagttatatcataggatagaaaaagggtgatca |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45147845 |
caagctagttatatcataggatagaaaaagggtgatca |
45147808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University