View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_26 (Length: 352)
Name: NF18398_low_26
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_26 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 26936869 - 26937186
Alignment:
| Q |
13 |
aatatacttctttagtaaatatccatcaaaacaagcatataatcattaaaattgttgcaaaatttgagaaaaagacttaacttattgatatgtttaaact |
112 |
Q |
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| T |
26936869 |
aatatacttctttagtaaatatccatcaaaacaagcatataatcattaaaattattgcaaaatttgagaaaaagacttaacttattgatatgtttaaact |
26936968 |
T |
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| Q |
113 |
tgagaaactaaattaaccaacacttacaatttcaaggattaaaatgtgtatttactcgctatcttatgaaattgtaatatgaagatgnnnnnnncatgac |
212 |
Q |
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| T |
26936969 |
tgagaaactaaattaaccaacacttacaatttcaaggattaaaatgtgtatttactcgctatcttatgaaattgtaatatgaagatg-----aacatgac |
26937063 |
T |
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| Q |
213 |
ttacattttttaatctcaggttgatcaacaatgccaattcaactgtgcctttgcagttcattataagaccaagagaaagagcatctctaaatggcatcct |
312 |
Q |
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| T |
26937064 |
ttacattttttaatctcaggttgatcaacaatgccaattcaactgtgcctttgcagttcattataagaccaagagaaagagcatctctaaatggcatcct |
26937163 |
T |
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| Q |
313 |
acagaaaagtagaggcaataaaa |
335 |
Q |
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| T |
26937164 |
acaaaaaagtagaggcaataaaa |
26937186 |
T |
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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 41356 - 41394
Alignment:
| Q |
119 |
actaaattaaccaacacttacaatttcaaggattaaaat |
157 |
Q |
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| T |
41356 |
actaaattaaccaacacttacaatttcaatgactaaaat |
41394 |
T |
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