View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_28 (Length: 344)
Name: NF18398_low_28
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_28 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 15842162 - 15841827
Alignment:
| Q |
9 |
agaagcaaagggcaaccttgttataaaatatttgcttgcatatatttatgtactgcacactacctattgttgttgtatgcagtaaaaagtgcttcataat |
108 |
Q |
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| T |
15842162 |
agaaacaaagggcaaccttgttataaaatatttgcttgcatatatttatgtactgcacactacctattgttgttgtatgcagtaaaaagtgcttcataat |
15842063 |
T |
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| Q |
109 |
ttatggtatttatgtttcaaatttcaattgagttgtcatgttcctacttatttaagggtaccaatatcctaacaaaaacaacggataccaacggaatttc |
208 |
Q |
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| T |
15842062 |
ttatggtatttatgtttcaaatttcaattgagttgtcatgttcctacttatttaagggtaccaatatcctaacaaaaacaacggataccaacggaatttc |
15841963 |
T |
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| Q |
209 |
cttataatatttacttccccatattttacactccagcttctcttattatttgtttcttacagtatatttttatattatcagagaaaatggacagcttaaa |
308 |
Q |
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| T |
15841962 |
cttataatatttacttccccatattttacactccagcttctcttattatttgtttcttacagtatatttttatattatcagagaaaatggacagcttaaa |
15841863 |
T |
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| Q |
309 |
gttctcagtgcccatcatcaatctggaggggtacta |
344 |
Q |
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| T |
15841862 |
gttctcagtgcccatcatcaatctggaggggtacta |
15841827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 140 - 344
Target Start/End: Complemental strand, 15827789 - 15827587
Alignment:
| Q |
140 |
gttgtcatgttcctacttatttaagggtaccaatatcctaacaaaaacaacggataccaacggaatttccttataatatttacttccccatattttacac |
239 |
Q |
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| T |
15827789 |
gttgtcatgtttctactcatttaagggtaccaatatcctaataaaaacaaaggaatccaaaggaatttcctcataatatttattctcccataccttacat |
15827690 |
T |
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| Q |
240 |
tccagcttctcttattatttgtttcttacagtatatttttatattatcagagaaaatggacagcttaaagttctcagtgcccatcatcaatctggagggg |
339 |
Q |
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| T |
15827689 |
tccagtttctcttattatttgttt--tacagtatatttttattttatcagagaaaatggacagcttaaagttctcagcgcccatcatcaatctggagggg |
15827592 |
T |
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| Q |
340 |
tacta |
344 |
Q |
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||||| |
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| T |
15827591 |
tacta |
15827587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 15822191 - 15822128
Alignment:
| Q |
25 |
cttgttataaaatatttgcttgcatatatttatgtactgcacactacctattgttgttgtatgc |
88 |
Q |
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| T |
15822191 |
cttgttatgaaatatttgctttcataaatttatgtactgtacactacttattgtagttgtatgc |
15822128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 344
Target Start/End: Original strand, 10706012 - 10706122
Alignment:
| Q |
235 |
tacactccagcttctcttattatttgtttcttacagtatatttttatat-tatcagagaaaatggacagcttaaagttctcagtgcccatcatcaatctg |
333 |
Q |
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|||||||||||||| ||| ||||||||||||||| |||| ||||| | ||||||||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
10706012 |
tacactccagcttcactttttatttgtttcttacggtatgttttttgttctatcagagaaagtggacagcttgaagttctcagcgcccatcatcaatctg |
10706111 |
T |
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| Q |
334 |
gaggggtacta |
344 |
Q |
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| T |
10706112 |
gaggggtacta |
10706122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 344
Target Start/End: Original strand, 47447675 - 47447869
Alignment:
| Q |
156 |
ttatttaagggtaccaatatcctaacaaaaa-caacggataccaacggaatttccttataatatttacttccccatattttacactccagcttctcttat |
254 |
Q |
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|||||||||||||||| || ||||| ||||| ||| ||||||| | ||||||| || | ||||| |||| |||||| |||||||||| ||| || | |
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| T |
47447675 |
ttatttaagggtaccactaccctaaaaaaaagcaaaggataccgaaggaatttactaaaaatatgtactctcccataccatacactccagtttcactctt |
47447774 |
T |
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| Q |
255 |
tatttgtttcttacagtatatttttatatt-------atcagagaaaatggacagcttaaagttctcagtgcccatcatcaatctggaggggtacta |
344 |
Q |
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| T |
47447775 |
cat--gtttcttacagtatattttttttttttattctatcagagaaaatggacagcttgaagttctcagtgcccatcatcaatctggaggggtacta |
47447869 |
T |
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