View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18398_low_29 (Length: 344)
Name: NF18398_low_29
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 26936637 - 26936300
Alignment:
| Q |
1 |
tatgatccttctagaaggtttcttgcttataaaaggaggacaatattgcatcaccaaagcgacgaggaattgcgcatactagcttgcattcacaaaccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26936637 |
tatgatccttctagaaggtttcttgcttataaaaggaggacaatattgcatcaccaaagcgaagaagaattgcgcatactagcttgcattcacaaaccag |
26936538 |
T |
|
| Q |
101 |
ataatgtattggctgttctgaacctccttgcagcttcgaatgcaactgaaaaaacccgcatagatttagttgtactacagctagttaagcttgttggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26936537 |
ataatgtattggctgttctgaacctccttgcagcttcgaatgcaactgaaaaaacccgcatagatttagttgtactgcagctagttaagcttgttggaag |
26936438 |
T |
|
| Q |
201 |
agcagcctccgtgcttgttgcccacataccgcgagaaaagcctagcgaaagaatcttcaatgcattcagcaaatttgaagacgcttataagggaaaggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26936437 |
agcagcctccgtgcttgttgcccacataccgcgagaaaagcctagcgaaagaatcttcaatgcattcagcaaatttgaagacgcttataagggaaaggta |
26936338 |
T |
|
| Q |
301 |
tcattgcattgctataaaggtatctcaccctatgctac |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26936337 |
tcattgcattgctataaaggtatctcaccctatgctac |
26936300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University