View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_3 (Length: 584)
Name: NF18398_low_3
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_3 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Original strand, 32099210 - 32099711
Alignment:
| Q |
18 |
agttgatggtggtgttggcaaagaggatgattgtgacacaaataagcaaggcaaagagggtgaaaatgaagggaaactttctgtctttgtagaatgtttc |
117 |
Q |
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| T |
32099210 |
agttgatggtggtgttggcaaagaggatgattgtgacacaaataagcaaggcaaagagggtgaaaatgaatggaaactttctgtctttgtagaatgtttc |
32099309 |
T |
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| Q |
118 |
aacaaaatttgtcattcttgatttgatacaactagagaaagaaagagaggcttgtgcttttacaaaggaagaaattagcatgcagatcaaagattgtttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32099310 |
aacaaaatttgtcattcttgatttgatacaactagagaaagaaagagaggattgtgcttttacaaaggaagaaattagcatgcagatcaaagattgtttt |
32099409 |
T |
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| Q |
218 |
tatacatttatagaattgaaatatttggatctcactgatctcatattttccaacacatatatgttagtgaagttagaaaagggagacagaaggttacgct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32099410 |
tatacatttatagaattgaaatatttggatctcactgatctcatattttccaacacatatatgttagtgaagttagaaaagggagacagaaggttacgct |
32099509 |
T |
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| Q |
318 |
agtcgctaattggaattgttcaaggcaacacatttgataaattatatttgacagctttcaataaactactatatattctgcatggctgccactatgttgg |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32099510 |
agtcgctaataggaattgttcaaggcaacacatttgataaattatatttgacagctttcaataaactactatatattctgcatggctgccactatgttgg |
32099609 |
T |
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| Q |
418 |
gaaaatactacatttgattgccggagccatagtcaccc---nnnnnnnnttataatttagtacatacatatatattgtgatcatctattaattaactaag |
514 |
Q |
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| T |
32099610 |
gaaaatactacatctgattgccggagccatagtcacccaaaaaaaaaaattataatttagtacatacatatatattgtgatcatctattaattaactaag |
32099709 |
T |
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| Q |
515 |
tg |
516 |
Q |
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| T |
32099710 |
tg |
32099711 |
T |
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Target: scaffold0019 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 509 - 574
Target Start/End: Complemental strand, 37239 - 37174
Alignment:
| Q |
509 |
actaagtgcttgtttggttcaacatccactttgttaatatcacgtctcaatatttattttcctttg |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
37239 |
actaagtgcttgtttggttcaacatccactttgttaatatcgcgtctcaatacttattttcctttg |
37174 |
T |
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