View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18398_low_30 (Length: 334)

Name: NF18398_low_30
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18398_low_30
NF18398_low_30
[»] chr4 (3 HSPs)
chr4 (18-318)||(2510429-2510729)
chr4 (19-104)||(2512170-2512255)
chr4 (191-284)||(12461488-12461581)
[»] chr8 (3 HSPs)
chr8 (191-312)||(15063850-15063971)
chr8 (214-296)||(24272160-24272242)
chr8 (190-284)||(16217831-16217925)
[»] scaffold0128 (1 HSPs)
scaffold0128 (190-294)||(14547-14651)
[»] chr7 (2 HSPs)
chr7 (191-293)||(16366894-16366996)
chr7 (139-179)||(34545310-34545350)
[»] scaffold0113 (1 HSPs)
scaffold0113 (191-284)||(22412-22505)
[»] chr5 (1 HSPs)
chr5 (191-284)||(26059890-26059983)
[»] chr3 (3 HSPs)
chr3 (190-319)||(16015758-16015887)
chr3 (208-284)||(2281592-2281668)
chr3 (191-296)||(14264194-14264299)
[»] chr1 (1 HSPs)
chr1 (214-296)||(3257026-3257108)
[»] chr6 (1 HSPs)
chr6 (139-184)||(22543813-22543858)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 2510429 - 2510729
Alignment:
Q  18 gttcaaaggtctcagcaggaaggatagtagtgcgaggtttggcatctatgtcagaatggaaagaaatgaaaagaaagggaaagaaaggtgtactgaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2510429 gttcaaaggtctcagcaggaaggatagtagtgcgaggtttggcatctatgtcagaatggaaagaaatgaaaagaaagggaaagaaaggtgtactgaatca 2510528  T
Q  118 ttctgggagaattgaggtaagaataagctataatcacttttctagcttttggtttatgtttgtttttatgagttttgggtatgcgaaaagtgttgaaaac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2510529 ttctgggagaattgaggtaagaataagctataatcacttttctagcttttgggttatgtttgtttttatgagttttgggtatgcgaaaagtgttgaaaac 2510628  T
Q  218 ttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttgatgaaaattgtgaagttattgttgattgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2510629 ttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttgatgaaaattgtgaagttattgttgattgt 2510728  T
Q  318 t 318  Q
    |    
T  2510729 t 2510729  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 2512170 - 2512255
Alignment:
Q  19 ttcaaaggtctcagcaggaaggatagtagtgcgaggtttggcatctatgtcagaatggaaagaaatgaaaagaaagggaaagaaag 104  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2512170 ttcaaaggtctcatcaggaaggatagtagtgcgaggtttggcatctatgtcagaatggaaagaaataaaaagaaagggaaagaaag 2512255  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 12461581 - 12461488
Alignment:
Q  191 tttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaa 284  Q
    |||||||||  ||||  ||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||  |||||||| ||||||||||    
T  12461581 tttgggtatatgaaagttgttgaaaactcgttgttgatgcataaatttcattgttgatatatgttaagttgttcactttgagaatttagcttaa 12461488  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 312
Target Start/End: Complemental strand, 15063971 - 15063850
Alignment:
Q  191 tttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttgat 290  Q
    |||||||||| ||||  ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||| ||| |    
T  15063971 tttgggtatgtgaaagttgttgaaaacttgttgttgatgcataaatttcattgttgatatatgttaagttgtttactttgagaatttagcttaaattggt 15063872  T
Q  291 gaaaattgtgaagttattgttg 312  Q
    |||||| |||| | ||||||||    
T  15063871 gaaaatggtgatgatattgttg 15063850  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 24272242 - 24272160
Alignment:
Q  214 aaacttgttattgatgcatgaaattc-attgttgatatatgttaagttgtttgctttgagattttagcttaacttgatgaaaat 296  Q
    ||||||||| ||||||| | |||||| ||||||| | |||||||||| |||  ||||||||||||||||||| ||| |||||||    
T  24272242 aaacttgttgttgatgctt-aaattctattgttgttgtatgttaagtggttcactttgagattttagcttaaattggtgaaaat 24272160  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 16217925 - 16217831
Alignment:
Q  190 ttttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaa 284  Q
    ||||||||||| ||||  ||||||||||||||| ||||||| | || |||| | ||||||  |||| |  || || |||||||||||||||||||    
T  16217925 ttttgggtatgtgaaatttgttgaaaacttgttgttgatgcttaaatttcactattgataagtgttgaagtgattactttgagattttagcttaa 16217831  T

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Target: scaffold0128 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 14547 - 14651
Alignment:
Q  190 ttttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttga 289  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| |||||||| |||| ||||| |||     
T  14547 ttttgggtatgtgaaaagtgttgaaaaattgttgttgatgcatgacattcattgttgatatatgctaacttgtttactttgagaatttaacttaaattgg 14646  T
Q  290 tgaaa 294  Q
    |||||    
T  14647 tgaaa 14651  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 16366996 - 16366894
Alignment:
Q  191 tttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttgat 290  Q
    ||||||||| |||||  |||||||||||| || ||||||||| || |||||||||||||||||||||||||||| ||||||||  ||||||||| ||| |    
T  16366996 tttgggtatacgaaagttgttgaaaacttattgttgatgcataaatttcattgttgatatatgttaagttgtttactttgagaaattagcttaaattggt 16366897  T
Q  291 gaa 293  Q
    |||    
T  16366896 gaa 16366894  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 34545350 - 34545310
Alignment:
Q  139 aataagctataatcacttttctagcttttggtttatgtttg 179  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  34545350 aataagctataatcacttttctagcttttgggtcatgtttg 34545310  T

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Target: scaffold0113 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 22412 - 22505
Alignment:
Q  191 tttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaa 284  Q
    |||| ||||| ||||  ||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  22412 tttgagtatgtgaaagttgttgaaaacttgttgttgatgcataaatttcattattgatatatgttaagttgtttactttgagagtttagcttaa 22505  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 26059983 - 26059890
Alignment:
Q  191 tttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaa 284  Q
    |||||||||| ||||  ||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  26059983 tttgggtatgtgaaagttgttgaaaacttggtgttgatgcatgaatttcattgttgacatatgttaagttgtttagtttgagaatttagcttaa 26059890  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 16015758 - 16015887
Alignment:
Q  190 ttttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttga 289  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||| || |||||||||||| | | ||| | |  |||||||||| |||||||| |||     
T  16015758 ttttgggtatgtgaaaattgttgaaaacttgttgttgatgcatgaattttattgttgatataagatgagtcgatgactttgagattctagcttaaattgg 16015857  T
Q  290 tgaaaattgtgaagttattgttgattgttg 319  Q
    ||||||| |||| ||| || |||| |||||    
T  16015858 tgaaaatggtgatgttcttattgaatgttg 16015887  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 2281668 - 2281592
Alignment:
Q  208 tgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaa 284  Q
    ||||||||||||||| ||||||| | || ||||||||||||||||| |||||||||  |||||| | ||||||||||    
T  2281668 tgttgaaaacttgttgttgatgcttaaatttcattgttgatatatgctaagttgttcactttgaaaatttagcttaa 2281592  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 14264299 - 14264194
Alignment:
Q  191 tttgggtatgcgaaaagtgttgaaaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttgat 290  Q
    |||| ||||| ||||| |||||||||||| || |||||||||||| ||| ||||||| ||||| | | ||| |  |||||||||| |||||||| ||| |    
T  14264299 tttgagtatgtgaaaattgttgaaaactttttgttgatgcatgaatttcgttgttgacatatgatgaattgatgactttgagattctagcttaaattggt 14264200  T
Q  291 gaaaat 296  Q
    ||||||    
T  14264199 gaaaat 14264194  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 3257108 - 3257026
Alignment:
Q  214 aaacttgttattgatgcatgaaattcattgttgatatatgttaagttgtttgctttgagattttagcttaacttgatgaaaat 296  Q
    ||||||||| ||| |||||||||||||| |||   ||||||||||||| |  || || | |||||||||||||||||||||||    
T  3257108 aaacttgttgttgttgcatgaaattcatggtttgaatatgttaagttgataactatgtgtttttagcttaacttgatgaaaat 3257026  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 22543858 - 22543813
Alignment:
Q  139 aataagctataatcacttttctagcttttggtttatgtttgttttt 184  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||    
T  22543858 aataagctataatcatttttctagcttttgggtcatgtttgttttt 22543813  T

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