View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_31 (Length: 318)
Name: NF18398_low_31
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 36057230 - 36057518
Alignment:
| Q |
20 |
gctgagaatccatatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctcgattcctgagagcgaaagtttcaaaaagttcttttaa |
119 |
Q |
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| T |
36057230 |
gctgagaatccatacgtgcctcgtaattatcaagagatccatacctgaagtgattaggggttcgattcctgagagcgaaagtttcaaaaagttcttttaa |
36057329 |
T |
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| Q |
120 |
accacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagg |
219 |
Q |
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| T |
36057330 |
accacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagg |
36057429 |
T |
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| Q |
220 |
gagtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttgcctttg |
308 |
Q |
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| T |
36057430 |
gagtacttatagaaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttggctttg |
36057518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 28723708 - 28723808
Alignment:
| Q |
199 |
aaaggtaaatgaaacataagggagtacttatag-aaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgc |
297 |
Q |
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| T |
28723708 |
aaaggtaaagggaacataagggagtacatattggaaatgtctaatctcgcatcaaaactcaaggcactgaagttagaacttcctgaagatttaattgtgc |
28723807 |
T |
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| Q |
298 |
a |
298 |
Q |
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| T |
28723808 |
a |
28723808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 302
Target Start/End: Complemental strand, 23070502 - 23070341
Alignment:
| Q |
141 |
aagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttat-agaaatgtct |
239 |
Q |
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||||||||||||||||| | |||| |||||||| || || |||||||||| | | ||||||||| | ||||||||||| ||| | | |||||||||| |
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| T |
23070502 |
aagaatgataaggttgaaactagtattgttttatccaaacttatttcaatgagct-acaaaggtaaagggaacataagggaatacatcttagaaatgtct |
23070404 |
T |
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| Q |
240 |
aatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttg |
302 |
Q |
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| T |
23070403 |
aatcttgccttcaaactcaaggcacggaatttagaacttcttgaagatttaattgtgcacttg |
23070341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 25461738 - 25461788
Alignment:
| Q |
32 |
tatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctc |
82 |
Q |
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| T |
25461738 |
tatgtgcctcatgattatcaaaatatccatacctgaaatgattaggggctc |
25461788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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