View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_33 (Length: 311)
Name: NF18398_low_33
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 1743763 - 1744035
Alignment:
| Q |
17 |
aaaaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcaga |
116 |
Q |
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| T |
1743763 |
aaaaatctcgagagtagccgagaaaggaatagaatagtggaatcatgtattgttaaagaaaatttcacttggtttgtaatggaaaggaatttcttgcaga |
1743862 |
T |
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| Q |
117 |
ccatagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatataat |
216 |
Q |
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|||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
1743863 |
ccatagaaacagactccaaatcttttccttggccaaggaatttgaagattgattcccaacattcttgaggaaaatctttcaataacatatttgatataat |
1743962 |
T |
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| Q |
217 |
-----ttgatctagaaagttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataa |
284 |
Q |
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| T |
1743963 |
aaatgttgatctagaaagttaagatgagaatgatcaacaaatttaatggcttaatcatttataaactcaataa |
1744035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 2006619 - 2006422
Alignment:
| Q |
17 |
aaaaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcaga |
116 |
Q |
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||||||| | |||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
2006619 |
aaaaatcccaagagtagccgaggaaggaatggaacagtgggatcatgtactgttagagatgctttaactcggtttgtaatggaaaggaatttcttgcaga |
2006520 |
T |
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| Q |
117 |
ccatagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatata |
214 |
Q |
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| T |
2006519 |
ccatagaaacagactccaaatcatctccttggccaaggaatcttaagattgattcccaacattcttgaggaaaatctttcactaatatatttgatata |
2006422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 1749110 - 1749170
Alignment:
| Q |
229 |
gttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataaaccaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||||| |
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| T |
1749110 |
gttaagatgagaatgatcaacaaatgtaatggcttaataatttcttagctcaatgaaccaa |
1749170 |
T |
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