View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18398_low_34 (Length: 311)

Name: NF18398_low_34
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18398_low_34
NF18398_low_34
[»] chr3 (7 HSPs)
chr3 (1-297)||(26290383-26290684)
chr3 (1-40)||(8789558-8789597)
chr3 (1-83)||(29508456-29508538)
chr3 (1-38)||(1438816-1438853)
chr3 (43-112)||(3631732-3631801)
chr3 (1-41)||(11313807-11313847)
chr3 (1-41)||(16192757-16192797)
[»] chr6 (10 HSPs)
chr6 (1-111)||(10339057-10339173)
chr6 (1-72)||(26562701-26562777)
chr6 (1-40)||(7265601-7265640)
chr6 (1-40)||(9025502-9025541)
chr6 (1-40)||(11591878-11591917)
chr6 (1-40)||(19040364-19040403)
chr6 (1-54)||(9629395-9629448)
chr6 (1-38)||(13360382-13360419)
chr6 (1-53)||(20518357-20518409)
chr6 (232-260)||(20785054-20785082)
[»] chr4 (9 HSPs)
chr4 (1-41)||(18576044-18576084)
chr4 (1-45)||(36635336-36635380)
chr4 (1-41)||(15659767-15659807)
chr4 (1-111)||(3947704-3947813)
chr4 (1-39)||(22440609-22440647)
chr4 (1-38)||(903934-903971)
chr4 (1-38)||(9996852-9996889)
chr4 (3-40)||(40613464-40613501)
chr4 (9-84)||(22234849-22234929)
[»] chr2 (3 HSPs)
chr2 (1-62)||(21616774-21616836)
chr2 (3-40)||(30471052-30471089)
chr2 (232-260)||(15045528-15045556)
[»] chr1 (14 HSPs)
chr1 (1-76)||(25361898-25361976)
chr1 (1-40)||(1864888-1864927)
chr1 (1-40)||(7918219-7918258)
chr1 (1-40)||(9709832-9709871)
chr1 (1-40)||(10572597-10572636)
chr1 (1-40)||(25098563-25098602)
chr1 (1-40)||(44482242-44482281)
chr1 (1-83)||(1486675-1486756)
chr1 (1-39)||(19324574-19324612)
chr1 (4-111)||(10233268-10233372)
chr1 (1-38)||(40181883-40181920)
chr1 (1-41)||(6427362-6427402)
chr1 (1-85)||(19562584-19562668)
chr1 (4-40)||(34371728-34371764)
[»] chr7 (6 HSPs)
chr7 (1-76)||(32308132-32308212)
chr7 (1-83)||(21880164-21880240)
chr7 (1-83)||(1433466-1433547)
chr7 (2-40)||(22602718-22602756)
chr7 (1-41)||(17307905-17307945)
chr7 (1-41)||(35297679-35297719)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-40)||(21055-21094)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-40)||(44533-44572)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-40)||(135320-135359)
[»] chr8 (2 HSPs)
chr8 (1-40)||(34897097-34897136)
chr8 (1-41)||(11803271-11803311)
[»] chr5 (6 HSPs)
chr5 (1-40)||(6471897-6471936)
chr5 (1-39)||(24273039-24273077)
chr5 (1-39)||(24389137-24389175)
chr5 (2-40)||(41091265-41091303)
chr5 (1-80)||(32766906-32766990)
chr5 (1-41)||(39205892-39205932)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 26290383 - 26290684
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt-----tcgtgccggtgtcggaaacggcacatgtccgacaccaggacacacattgttggag 95  Q
    ||||||||||||||||||| ||||||||||||||||||||     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290383 aatttgagaaaatcacatagttcggtttaattatatgtgtcagtgtcgttccggtgtcggaaacggcacatgtccgacaccaggacacacattgttggag 26290482  T
Q  96 tagtgtccgtgcttcagagattttactcaactagttcacattcagtacctgaattcgcaaagatcgtcttcgtcttaacatagtgaaaaaacattcatat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290483 tagtgtccgtgcttcagagattttactcaactagttcacattcagtacctgaattcgcaaagatcgtcttcgtcttaacatagtgaaaaaacattcatat 26290582  T
Q  196 caaaactaacaagaaaataaagtttaaccataacccaatacatattcatcatacacatattatctgtctcaatttttaaccaagttctctacatgatctt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290583 caaaactaacaagaaaataaagtttaaccataacccaatacatattcatcatacacatattatctgtctcaatttttaaccaagttctctacatgatctt 26290682  T
Q  296 tg 297  Q
    ||    
T  26290683 tg 26290684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8789597 - 8789558
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  8789597 aatttgagaaaatcacataattccgtgtaattatatgtgt 8789558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29508456 - 29508538
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcggaaacggcacatgtccgacaccaggacac 83  Q
    ||||||| ||||||| ||||||| || |||||||||||||   ||  ||||||||| ||| |||| |||||||||| ||||||    
T  29508456 aatttgaaaaaatcatataattcagtgtaattatatgtgtcgatgttggtgtcggacacgacacacgtccgacaccgggacac 29508538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1438816 - 1438853
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgt 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  1438816 aatttgagaaaatcacataattcagtataattatatgt 1438853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 3631732 - 3631801
Alignment:
Q  43 gtgccggtgtcggaaacggcacatgtccgacaccaggacacacattgttggagtagtgtccgtgcttcag 112  Q
    ||||| |||||||| ||| |||||||||||||||||||||| | | ||  ||| ||||||||||| ||||    
T  3631732 gtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtgcctcag 3631801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11313847 - 11313807
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  11313847 aatttgagaaaatcacataatttagtgtaattatatgtgtt 11313807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16192797 - 16192757
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  16192797 aatttgagaaaataacataattcagtgtaattatatgtgtt 16192757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10339173 - 10339057
Alignment:
Q  1 aatttgagaaaatcacataattcggt-ttaattatatgtgt-----tcgtgccggtgtcggaaacggcacatgtccgacaccaggacacacattgttgga 94  Q
    ||||||||||||||||||||||| || ||||||||||||||      |||| |||||||||| ||| ||||||||||||||  |||||| | |  | |||    
T  10339173 aatttgagaaaatcacataattcagtgttaattatatgtgtcagtgccgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcgga 10339074  T
Q  95 gtagtgtccgtgcttca 111  Q
    | |||||||||||||||    
T  10339073 ggagtgtccgtgcttca 10339057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26562701 - 26562777
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt-----tcgtgccggtgtcggaaacggcacatgtccga 72  Q
    ||||||||||||||||||||||| || |||||||||||||     ||||| |||||||| | |||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtcgaacacggcacatgtccga 26562777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7265640 - 7265601
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  7265640 aatttgagaaaatcacataattcagtgtaattatatgtgt 7265601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9025541 - 9025502
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  9025541 aatttgagaaaatcacataattcagtgtaattatatgtgt 9025502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11591917 - 11591878
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  11591917 aatttgagaaaatcacataattcagtgtaattatatgtgt 11591878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19040364 - 19040403
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  19040364 aatttgagaaaatcacataattcagtgtaattatatgtgt 19040403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9629395 - 9629448
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcg 54  Q
    |||||||||||||||||||||||  | |||||||||||||  ||| ||||||||    
T  9629395 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggtgtcg 9629448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13360419 - 13360382
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgt 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  13360419 aatttgagaaaatcacataattcagtgtaattatatgt 13360382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20518357 - 20518409
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtc 53  Q
    ||||||||||||| |||||| || || |||||||||||||| ||| |||||||    
T  20518357 aatttgagaaaattacataaatcagtataattatatgtgttggtgtcggtgtc 20518409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 20785082 - 20785054
Alignment:
Q  232 aatacatattcatcatacacatattatct 260  Q
    |||||||||||||||||||||||||||||    
T  20785082 aatacatattcatcatacacatattatct 20785054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18576084 - 18576044
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  18576084 aatttgagaaaatcacataattcggtgtaattatatgtgtt 18576044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36635336 - 36635380
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtg 45  Q
    ||||||||||||||||||||||| || ||||||||||||||||||    
T  36635336 aatttgagaaaatcacataattcagtgtaattatatgtgttcgtg 36635380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15659807 - 15659767
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  15659807 aatttgagaaaatctcataattcggtgtaattatatgtgtt 15659767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 3947813 - 3947704
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcggaaacggcacatgtccgacaccaggacacacattgttggagtagtg 100  Q
    ||||||| |||||| |||||||| || |||||| | ||||  ||| || ||||||| ||| ||| |||||||||||||||||||| |  |  ||| ||||    
T  3947813 aatttgaaaaaatcgcataattcagtgtaattacaagtgtcagtgtcg-tgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtg 3947715  T
Q  101 tccgtgcttca 111  Q
    |||||||||||    
T  3947714 tccgtgcttca 3947704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22440647 - 22440609
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtg 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  22440647 aatttgagaaaatcacataattcagtgtaattatatgtg 22440609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 903934 - 903971
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgt 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  903934 aatttgagaaaatcacataattcagtgtaattatatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9996852 - 9996889
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgt 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  9996852 aatttgagaaaatcacataattcagtataattatatgt 9996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 40613464 - 40613501
Alignment:
Q  3 tttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||| || |||||||||||||    
T  40613464 tttgagaaaatcacataattcagtgtaattatatgtgt 40613501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 22234929 - 22234849
Alignment:
Q  9 aaaatcacataattcggtttaattatatgtgt-----tcgtgccggtgtcggaaacggcacatgtccgacaccaggacaca 84  Q
    ||||||||||||||| || ||||| |||||||     ||||| ||||||| || ||| ||| |||||||||||||||||||    
T  22234929 aaaatcacataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacaccaggacaca 22234849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21616774 - 21616836
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtg-ccggtgtcggaaacggc 62  Q
    ||||||||||||||||||||||| || ||||||||||||| |||| |||||| |||| |||||    
T  21616774 aatttgagaaaatcacataattcagtgtaattatatgtgtacgtgtccggtgccggacacggc 21616836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 30471052 - 30471089
Alignment:
Q  3 tttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    |||||||||||||||||||||| | |||||||||||||    
T  30471052 tttgagaaaatcacataattcgatgtaattatatgtgt 30471089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 15045556 - 15045528
Alignment:
Q  232 aatacatattcatcatacacatattatct 260  Q
    |||||||||||||||||||||||||||||    
T  15045556 aatacatattcatcatacacatattatct 15045528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25361898 - 25361976
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt-----tcgtgccggtgtcggaaacggcacatgtccgacacc 76  Q
    ||||||||||||||||||||||| || |||||||||||||     ||||| |||||||||| |||  ||||||||||||||    
T  25361898 aatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacg--acatgtccgacacc 25361976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1864927 - 1864888
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  1864927 aatttgagaaaatcacataattcagtgtaattatatgtgt 1864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7918258 - 7918219
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  7918258 aatttgagaaaatcacataattcagtgtaattatatgtgt 7918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9709832 - 9709871
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  9709832 aatttgagaaaatcacataattcgttgtaattatatgtgt 9709871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10572636 - 10572597
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  10572636 aatttgagaaaatcacataattcggtgtaattaaatgtgt 10572597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25098602 - 25098563
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  25098602 aatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44482242 - 44482281
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  44482242 aatttgagaaaatcacataattcagtgtaattatatgtgt 44482281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1486756 - 1486675
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcggaaacggcacatgtccgacaccaggacac 83  Q
    ||||||| ||||||||||||||| || |||||||| ||||  ||| | |||||||| ||| ||| ||||||||||| ||||||    
T  1486756 aatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtc-gtgtcggacacgacacgtgtccgacaccgggacac 1486675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19324574 - 19324612
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtg 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  19324574 aatttgagaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 10233268 - 10233372
Alignment:
Q  4 ttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcggaaacggcacatgtccgacaccaggacacacattgttggagtagtgtcc 103  Q
    |||||||||||||||||||| || |||||||||||||  |||  ||||||||    | ||  |||||||||||||||||||| |  |  ||| |||||||    
T  10233268 ttgagaaaatcacataattcagtgtaattatatgtgtctgtgttggtgtcgg---tgtcatgtgtccgacaccaggacacacctaatcagaggagtgtcc 10233364  T
Q  104 gtgcttca 111  Q
    ||||||||    
T  10233365 gtgcttca 10233372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40181883 - 40181920
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgt 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  40181883 aatttgagaaaatcacataattcagtgtaattatatgt 40181920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6427362 - 6427402
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    |||||||||||||||||||||||  | ||||||||||||||    
T  6427362 aatttgagaaaatcacataattcaatgtaattatatgtgtt 6427402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19562668 - 19562584
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcggaaacggcacatgtccgacaccaggacacac 85  Q
    |||||||||||||| |||| ||| || |||||||||||||  ||| | |||||||| ||  ||| ||||||||||  ||||||||    
T  19562668 aatttgagaaaatctcatagttcagtgtaattatatgtgtaggtgtcagtgtcggatacaacacgtgtccgacacagggacacac 19562584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 34371728 - 34371764
Alignment:
Q  4 ttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    |||||||||||||||||||| || |||||||||||||    
T  34371728 ttgagaaaatcacataattcagtgtaattatatgtgt 34371764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32308132 - 32308212
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt-----tcgtgccggtgtcggaaacggcacatgtccgacacc 76  Q
    ||||||||||||||||||||||| || ||||| |||||||     ||||| |||||| ||| ||| |||||||||||||||    
T  32308132 aatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggacacgacacatgtccgacacc 32308212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21880164 - 21880240
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcggaaacggcacatgtccgacaccaggacac 83  Q
    ||||||||||||| ||||||||| || |||||| | ||||      |||||||||| ||| ||||||||||||||||||||||    
T  21880164 aatttgagaaaattacataattcagtgtaattacaagtgt------cggtgtcggacacgacacatgtccgacaccaggacac 21880240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1433466 - 1433547
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgttcgtgccggtgtcggaaacggcacatgtccgacaccaggacac 83  Q
    |||||||||||||||||| ||| ||| |||||||||||||  ||| | |||||||| | | ||  ||||||||||||||||||    
T  1433466 aatttgagaaaatcacatcatttggtgtaattatatgtgtcggtgtc-gtgtcggacaagacatgtgtccgacaccaggacac 1433547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 22602756 - 22602718
Alignment:
Q  2 atttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    |||||||||||||||||||||| || |||||||||||||    
T  22602756 atttgagaaaatcacataattcagtgtaattatatgtgt 22602718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17307905 - 17307945
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  17307905 aatttgagaaaataacataattcagtgtaattatatgtgtt 17307945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35297719 - 35297679
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    |||||||||||||||||||||||  | ||||||||||||||    
T  35297719 aatttgagaaaatcacataattcattataattatatgtgtt 35297679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21055 - 21094
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  21055 aatttgagaaaatcacataagtcggtataattatatgtgt 21094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44572 - 44533
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  44572 aatttgagaaaatcacataattcagtgtaattatatgtgt 44533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 135359 - 135320
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  135359 aatttgagaaaatcacataattctgtgtaattatatgtgt 135320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34897097 - 34897136
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  34897097 aatttgagaaaatcacataattcagtgtaattatatgtgt 34897136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11803271 - 11803311
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    ||||| ||||||||||||||||| || ||||||||||||||    
T  11803271 aatttaagaaaatcacataattcagtgtaattatatgtgtt 11803311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6471936 - 6471897
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  6471936 aatttgagaaaatcacataattcagtgtaattatatgtgt 6471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24273077 - 24273039
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtg 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  24273077 aatttgagaaaatcacataattcagtgtaattatatgtg 24273039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24389137 - 24389175
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtg 39  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  24389137 aatttgagaaaatcacataattcagtgtaattatatgtg 24389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 41091303 - 41091265
Alignment:
Q  2 atttgagaaaatcacataattcggtttaattatatgtgt 40  Q
    |||||||||||||||||||||| || |||||||||||||    
T  41091303 atttgagaaaatcacataattcagtgtaattatatgtgt 41091265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32766990 - 32766906
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt-----cgtgccggtgtcggaaacggcacatgtccgacaccagga 80  Q
    |||||||||||||| || |||||  | ||||||||||||||     |||| |||||||| ||||| ||| |||||||||||||||    
T  32766990 aatttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacaccagga 32766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39205892 - 39205932
Alignment:
Q  1 aatttgagaaaatcacataattcggtttaattatatgtgtt 41  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  39205892 aatttgagaaaatcatataattaggtgtaattatatgtgtt 39205932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University