View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_37 (Length: 295)
Name: NF18398_low_37
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 41115345 - 41115531
Alignment:
| Q |
9 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgctaggt |
108 |
Q |
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| T |
41115345 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagtt--gtattcttgaagtgctaggt |
41115442 |
T |
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| Q |
109 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgctaccaacatgaatg |
197 |
Q |
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| T |
41115443 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgctaccaacatgaatg |
41115531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 41101806 - 41101978
Alignment:
| Q |
9 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgctaggt |
108 |
Q |
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| T |
41101806 |
acatcatcacgagttttaccagggttctgaactacggaggccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgcaaggt |
41101905 |
T |
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| Q |
109 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgc |
183 |
Q |
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| T |
41101906 |
tggtgaattcttgatcctcaagggatgcaagataagctgccaatc--aaacaaacaaaaattagatatgatctgc |
41101978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 41115601 - 41115629
Alignment:
| Q |
267 |
tcatagcaaatgattttaatagcaaataa |
295 |
Q |
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| T |
41115601 |
tcatagcaaatgattttaatagcaaataa |
41115629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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