View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_38 (Length: 295)
Name: NF18398_low_38
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 51933084 - 51933352
Alignment:
| Q |
20 |
catagtcgctatcatcactgtcactgtatgattctttacctcttttcttccaaccagcaccatcagatttgagtgcttgaactcttgttgagaagatggg |
119 |
Q |
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| T |
51933084 |
catagtcgctatcatcactgtcactgtatgattctttacctcttttcttccaaccagcaccatcagatttgagtgcttgaactcttgttgagaagatggg |
51933183 |
T |
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| Q |
120 |
gtttgagaaaagggtcctcgaattgaagagtttgttggtgggtttctggttgtaaagagaaaatgaattggggggtagattgaagtttatatgtttgatt |
219 |
Q |
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| T |
51933184 |
gtttgagaaaagggtcctcgaattgaagagtttgttggtgggtttctggttgtaaagagaaaatgaattggggggtagattgaagtttatatgtttgatt |
51933283 |
T |
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| Q |
220 |
gctgaaattaaagatggtgacagtggcaaagtgagtgccatggtcggaggctaacctagttctgtgctg |
288 |
Q |
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| T |
51933284 |
gctgaaattaaagatggtgacagtggcaaagtgagtgccatggtcggaggctaacctagttctgtgctg |
51933352 |
T |
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