View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_40 (Length: 290)
Name: NF18398_low_40
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 7427437 - 7427163
Alignment:
| Q |
1 |
tgttctgctcttacacattttatgctggataagatgcattgtttgtattaactatattctattttggctagttaaaacnnnnnnn-tgtaagcgacctaa |
99 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||| |||||| ||||||| |
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| T |
7427437 |
tgttctgctctaacatattttatgctggataagatgcattgttcgtattaactatattctactttggtttgttaaaaagaaataaatgtaagtgacctaa |
7427338 |
T |
|
| Q |
100 |
tggttcaacgaacttgttacaaaaaactcattgattatattcatagttttgggaaaagagtgagttaacggaggaaagtaagcgtaaggctcgagactaa |
199 |
Q |
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|| ||||||||||||||||| |||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7427337 |
tgattcaacgaacttgttaccaaaaacacattcataatattcatagttttgggaaaagagggagttaacggaggaaagtaagcgtaaggctcgagactaa |
7427238 |
T |
|
| Q |
200 |
aatgtggaagctgcgatgagaaattgcatcactaaatcatttccttcgtctcaataaaatacaattagacacatc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7427237 |
aatgtggaagctgcgatgagaaattgcatcactaaatcatttccttcgtctcaataaaatacaattagacacatc |
7427163 |
T |
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