View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_42 (Length: 283)
Name: NF18398_low_42
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 36164330 - 36164072
Alignment:
| Q |
11 |
taatactcagtgtcg--gtcctaaattttaggcacaagaagtgcactatgcaaagaacaatccaaccaagttctcaacacaaaagagtatacccacacaa |
108 |
Q |
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| T |
36164330 |
taatactcagtgtcgctgtcctaaattttaggcacaagaagtgcactatgcaaagaacaatccaaccaagttctcaacacaaaagagtatacccacacaa |
36164231 |
T |
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| Q |
109 |
gttcctaacccaacaaacaagaattaaaccaacctccacactttgctgcaataattatgcaggaagtgaaataaataattgacaaaagcttgcaagagac |
208 |
Q |
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| T |
36164230 |
gttcctaacccaacaaacaagaattaaaccaacctccacactttgctgcaataattattcaggaagtgaaataaataattgacaaaagcttgcaagagac |
36164131 |
T |
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| Q |
209 |
tatatactaagcttgattagaaattctgcttaaaatcacaatccaccaccctcccatat |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36164130 |
tatatactaagcttgattagaaattctgcttaaaatcacaatccaccaccctcccatat |
36164072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 30079992 - 30079920
Alignment:
| Q |
37 |
taggcacaagaagtgcactatgcaaagaacaatccaaccaagttctcaacacaaaagagtatacccacacaag |
109 |
Q |
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||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
30079992 |
taggcacaagaagtgcattatggaaagaacaatgcaaccaagttctcaacaaaaaagagtatacccacacaag |
30079920 |
T |
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