View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18398_low_49 (Length: 254)

Name: NF18398_low_49
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18398_low_49
NF18398_low_49
[»] chr6 (2 HSPs)
chr6 (156-245)||(5914151-5914240)
chr6 (43-107)||(5914315-5914379)
[»] chr7 (3 HSPs)
chr7 (175-245)||(34225983-34226054)
chr7 (175-245)||(34230111-34230182)
chr7 (175-238)||(36331600-36331664)
[»] scaffold0496 (1 HSPs)
scaffold0496 (204-244)||(9240-9280)
[»] chr5 (1 HSPs)
chr5 (174-222)||(22228821-22228869)
[»] chr3 (2 HSPs)
chr3 (175-238)||(13100861-13100925)
chr3 (182-238)||(21587127-21587184)
[»] scaffold0214 (1 HSPs)
scaffold0214 (177-238)||(29465-29527)
[»] chr1 (1 HSPs)
chr1 (174-214)||(29547943-29547984)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 5914240 - 5914151
Alignment:
Q  156 tggaagaaaaattgtatcttgttatgaaataaactaaaagacaagattaaagatgaagaagatgagatctttgtgtattattcatctcac 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  5914240 tggaagaaaaattgtatcttgttatgaaataaactaaaagacaagattaaagatgaagaagatgagagctttgtgtattattcttctcac 5914151  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 5914379 - 5914315
Alignment:
Q  43 caaataggaaattggttattaaattaaaacacgattaataataaatggattcaaactatgttatt 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5914379 caaaaaggaaattggttattaaattaaaacacgattaataataaatggattcaaactatgttatt 5914315  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 34225983 - 34226054
Alignment:
Q  175 tgttatgaaataaactaaaa-gacaagattaaagatgaagaagatgagatctttgtgtattattcatctcac 245  Q
    |||||||||||||||||||| |||||||| ||| ||| |||||||||   ||||||||||||||| ||||||    
T  34225983 tgttatgaaataaactaaaaagacaagatcaaatatggagaagatgaaggctttgtgtattattcttctcac 34226054  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 34230111 - 34230182
Alignment:
Q  175 tgttatgaaataaactaaaa-gacaagattaaagatgaagaagatgagatctttgtgtattattcatctcac 245  Q
    |||||||||||||||||||| |||||||| ||| ||| |||||||||   ||||||||||||||| ||||||    
T  34230111 tgttatgaaataaactaaaaagacaagatcaaatatggagaagatgaaggctttgtgtattattcttctcac 34230182  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 36331664 - 36331600
Alignment:
Q  175 tgttatgaaataaactaaaag-acaagattaaagatgaagaagatgagatctttgtgtattattc 238  Q
    |||||||||||||| | |||| |||||||||||||   ||||||||||| |||||||||||||||    
T  36331664 tgttatgaaataaatttaaaggacaagattaaagacatagaagatgagaactttgtgtattattc 36331600  T

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Target: scaffold0496 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 9240 - 9280
Alignment:
Q  204 aaagatgaagaagatgagatctttgtgtattattcatctca 244  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  9240 aaagatgaagaagatgagatttttgtgtattattcttctca 9280  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 22228821 - 22228869
Alignment:
Q  174 ttgttatgaaataaactaaaagacaagattaaagatgaagaagatgaga 222  Q
    ||||||||||||||| ||||| ||||||| ||||||||| |||||||||    
T  22228821 ttgttatgaaataaaataaaaaacaagatcaaagatgaaaaagatgaga 22228869  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 13100925 - 13100861
Alignment:
Q  175 tgttatgaaataaactaaaa-gacaagattaaagatgaagaagatgagatctttgtgtattattc 238  Q
    |||||| ||||||||||||| ||  |||||||||||||||||| ||| |||||||| ||||||||    
T  13100925 tgttataaaataaactaaaaagatcagattaaagatgaagaaggtgaaatctttgtatattattc 13100861  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 21587127 - 21587184
Alignment:
Q  182 aaataaactaaaag-acaagattaaagatgaagaagatgagatctttgtgtattattc 238  Q
    |||||||||||||| |||| || ||||||||||||||||||| ||| || ||||||||    
T  21587127 aaataaactaaaaggacaatatcaaagatgaagaagatgagagcttagtctattattc 21587184  T

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Target: scaffold0214 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 29465 - 29527
Alignment:
Q  177 ttatgaaataaactaaaa-gacaagattaaagatgaagaagatgagatctttgtgtattattc 238  Q
    |||||||||| ||||||| |||||||| ||||||| ||||||||| | |||| ||||||||||    
T  29465 ttatgaaatagactaaaaagacaagatcaaagatggagaagatgaaagctttttgtattattc 29527  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 29547984 - 29547943
Alignment:
Q  174 ttgttatgaaataaactaaaag-acaagattaaagatgaaga 214  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  29547984 ttgttatgaaataaactaaaagcacaagattaaagaagaaga 29547943  T

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