View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18398_low_5 (Length: 547)

Name: NF18398_low_5
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18398_low_5
NF18398_low_5
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-345)||(35481-35830)
[»] chr1 (14 HSPs)
chr1 (127-344)||(52947347-52947565)
chr1 (69-350)||(46652563-46652846)
chr1 (69-338)||(46651367-46651638)
chr1 (279-349)||(36145339-36145409)
chr1 (279-345)||(16673250-16673316)
chr1 (279-345)||(33257880-33257946)
chr1 (279-345)||(33278052-33278118)
chr1 (314-348)||(45915503-45915537)
chr1 (279-344)||(7653686-7653751)
chr1 (279-348)||(7655258-7655327)
chr1 (314-347)||(28649680-28649713)
chr1 (314-346)||(4062560-4062592)
chr1 (314-342)||(10771355-10771383)
chr1 (69-113)||(46604670-46604714)
[»] chr5 (10 HSPs)
chr5 (69-344)||(42775420-42775697)
chr5 (257-345)||(42776789-42776878)
chr5 (314-346)||(30381603-30381635)
chr5 (314-345)||(35988854-35988885)
chr5 (279-345)||(16308564-16308630)
chr5 (314-348)||(31024354-31024388)
chr5 (279-344)||(1418930-1418995)
chr5 (314-347)||(4285157-4285190)
chr5 (279-344)||(30332283-30332348)
chr5 (314-346)||(15795752-15795784)
[»] chr7 (18 HSPs)
chr7 (270-348)||(28848554-28848632)
chr7 (69-347)||(43546512-43546792)
chr7 (257-345)||(25008091-25008180)
chr7 (270-346)||(43545340-43545417)
chr7 (257-345)||(25009456-25009545)
chr7 (257-345)||(28849939-28850028)
chr7 (279-345)||(31392057-31392123)
chr7 (279-345)||(31393653-31393719)
chr7 (279-348)||(21715068-21715137)
chr7 (314-354)||(3843259-3843299)
chr7 (314-345)||(23966314-23966345)
chr7 (314-345)||(26776309-26776340)
chr7 (279-353)||(45277961-45278036)
chr7 (314-344)||(4706634-4706664)
chr7 (314-344)||(4707497-4707527)
chr7 (314-348)||(21914667-21914701)
chr7 (314-346)||(20016778-20016810)
chr7 (279-347)||(21716613-21716681)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-344)||(193591-193868)
[»] chr4 (20 HSPs)
chr4 (181-345)||(39929249-39929414)
chr4 (270-346)||(39927931-39928008)
chr4 (279-346)||(55947358-55947425)
chr4 (279-345)||(42889804-42889870)
chr4 (279-345)||(44251604-44251670)
chr4 (314-348)||(52477641-52477675)
chr4 (279-347)||(10337101-10337169)
chr4 (314-345)||(15807655-15807686)
chr4 (279-346)||(19994496-19994563)
chr4 (317-347)||(47848238-47848268)
chr4 (314-344)||(47864489-47864519)
chr4 (279-345)||(48713456-48713522)
chr4 (69-201)||(5236379-5236512)
chr4 (20-116)||(13506954-13507051)
chr4 (255-347)||(13508429-13508526)
chr4 (279-348)||(19996048-19996117)
chr4 (279-343)||(33609338-33609402)
chr4 (314-346)||(47848856-47848888)
chr4 (314-342)||(52502407-52502435)
chr4 (279-347)||(55948947-55949015)
[»] chr3 (11 HSPs)
chr3 (181-345)||(45981406-45981571)
chr3 (270-345)||(8391400-8391476)
chr3 (257-338)||(8392774-8392856)
chr3 (257-348)||(45982770-45982862)
chr3 (314-350)||(3990874-3990910)
chr3 (314-353)||(25165890-25165929)
chr3 (314-345)||(25166775-25166806)
chr3 (314-344)||(20289619-20289649)
chr3 (279-345)||(53529528-53529594)
chr3 (314-350)||(26052205-26052241)
chr3 (313-345)||(52935685-52935717)
[»] chr2 (17 HSPs)
chr2 (181-349)||(20587034-20587203)
chr2 (69-344)||(20588241-20588518)
chr2 (279-345)||(28563375-28563441)
chr2 (314-346)||(28917134-28917166)
chr2 (314-352)||(2237973-2238012)
chr2 (314-345)||(2238851-2238882)
chr2 (314-345)||(21716439-21716470)
chr2 (314-345)||(21720227-21720258)
chr2 (314-353)||(24559581-24559620)
chr2 (314-357)||(29090877-29090920)
chr2 (314-356)||(3149907-3149949)
chr2 (279-357)||(6844091-6844169)
chr2 (314-344)||(28916285-28916315)
chr2 (279-348)||(45493026-45493095)
chr2 (279-348)||(45500768-45500837)
chr2 (69-117)||(28563604-28563652)
chr2 (276-348)||(34591721-34591793)
[»] scaffold0524 (2 HSPs)
scaffold0524 (69-346)||(8851-9130)
scaffold0524 (279-341)||(7701-7763)
[»] scaffold0472 (2 HSPs)
scaffold0472 (177-355)||(10337-10516)
scaffold0472 (257-345)||(9019-9108)
[»] scaffold0369 (1 HSPs)
scaffold0369 (257-345)||(8241-8330)
[»] chr8 (11 HSPs)
chr8 (69-338)||(35505528-35505799)
chr8 (279-346)||(25264338-25264405)
chr8 (182-347)||(35506824-35506990)
chr8 (314-353)||(1939441-1939480)
chr8 (279-346)||(3158031-3158098)
chr8 (314-345)||(23154338-23154369)
chr8 (314-344)||(11761038-11761068)
chr8 (314-344)||(23153548-23153578)
chr8 (314-344)||(26635510-26635540)
chr8 (314-346)||(9122721-9122753)
chr8 (314-342)||(37586724-37586752)
[»] chr6 (13 HSPs)
chr6 (314-354)||(24051245-24051285)
chr6 (274-345)||(7678636-7678707)
chr6 (279-343)||(2956229-2956293)
chr6 (314-354)||(9699185-9699225)
chr6 (206-353)||(31994675-31994823)
chr6 (314-345)||(6159753-6159784)
chr6 (314-345)||(28302193-28302224)
chr6 (314-345)||(28509849-28509880)
chr6 (279-345)||(1258434-1258500)
chr6 (314-344)||(29979254-29979284)
chr6 (314-343)||(24052024-24052053)
chr6 (279-343)||(19084114-19084178)
chr6 (314-346)||(22352959-22352991)
[»] scaffold0141 (1 HSPs)
scaffold0141 (314-348)||(10302-10336)
[»] scaffold0765 (1 HSPs)
scaffold0765 (314-344)||(386-416)
[»] scaffold0518 (1 HSPs)
scaffold0518 (314-354)||(1070-1110)


Alignment Details
Target: scaffold0140 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 35830 - 35481
Alignment:
Q  1 acaaataaacagagggaaaaagaagatgaaaactacaatttttaaattaaaaatttgatatttaagacttttt-aatttcatccctttgcactctttcgt 99  Q
    ||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  35830 acaaataaacagaaggatgaagaagatgaaaactacagtttttaaattaaaaatttgatatttatgacttttttaatttcatccctttgcactttttcgt 35731  T
Q  100 ttttcgttttggtccctgaatctagccactccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgcca 199  Q
    ||||| || | |||||| |||||||||||| |||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  35730 ttttctttgtagtccctcaatctagccactacccagctcttttgacacgtaaccctccttttgccaagtcaccgtaagccacgtgtgtctccgtctgcca 35631  T
Q  200 cctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaag-cttacaaggagagttttgaaacaaaaaa---gatacaaggac 295  Q
    ||| ||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||| ||||    
T  35630 cctcgccgtttttgtaacgggagttaacgggaatgaccatttgcaaaacgaaaaaagacttacaaggagagttttgaaacaaaaaaaagaatacagggac 35531  T
Q  296 gaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  35530 gaattgcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 35481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 127 - 344
Target Start/End: Complemental strand, 52947565 - 52947347
Alignment:
Q  127 actccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaa 226  Q
    |||| ||||||||||||||||||||| ||||||||| || |||||| |||||||||| |||||||| ||||||||| ||| ||||||||| |||||||||    
T  52947565 actcaccaactcttttgacacgtaaccctccttttgtcaagtcacactaagccacgtatgtctccgcctgccacctcgccgtttttgtaacgggagttaa 52947466  T
Q  227 tgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa-aaaagatacaaggacgaattgcaaaaatacgtgaaattacaggga 325  Q
     |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||  ||||||||| ||    
T  52947465 cgggaagaatcatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaaaaaaagatacatggacgaattgcaaaaatgcgcaaaattacagaga 52947366  T
Q  326 cggtttgcatatttaagcc 344  Q
    |||||||||||||||||||    
T  52947365 cggtttgcatatttaagcc 52947347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 350
Target Start/End: Original strand, 46652563 - 46652846
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  46652563 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaac 46652662  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 267  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  46652663 tcacacttcgccgcgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 46652762  T
Q  268 agttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaata 350  Q
      ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||    
T  46652763 gattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaaata 46652846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 338
Target Start/End: Complemental strand, 46651638 - 46651367
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||     |||||||||      
T  46651638 tttttaatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaac 46651539  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 266  Q
    ||||| |   ||||||||||||||||||||||||    | ||||||||| ||||||||| |||| |||  | ||||||| |||     | ||||||||||    
T  46651538 tcacacttcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggatgaattgcaaa-cgattggcaacttacaagga 46651440  T
Q  267 gagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatt 338  Q
       ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||||||||||    
T  46651439 tgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatatt 46651367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 36145409 - 36145339
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaat 349  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| |||||||||||||||||    
T  36145409 aaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcctaaat 36145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 16673250 - 16673316
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  16673250 aaaaaagatacagggacgaaaaccaaaaacacgcaaaattacagggacgatttacatatttaagcct 16673316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 33257946 - 33257880
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||| ||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  33257946 aaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 33257880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 33278118 - 33278052
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||| ||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  33278118 aaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 33278052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 45915537 - 45915503
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaa 348  Q
    ||||||||||||||| |||||||||||||||||||    
T  45915537 aaattacagggacggattgcatatttaagcctaaa 45915503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 7653751 - 7653686
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| ||||||||||||    
T  7653751 aaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcc 7653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 7655258 - 7655327
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||| |||||||   |||||| |||  |||||||||| ||| ||| ||||||||||||||||    
T  7655258 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaagcctaaa 7655327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 28649713 - 28649680
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaa 347  Q
    ||||||||||||||| ||||||||||||||||||    
T  28649713 aaattacagggacggattgcatatttaagcctaa 28649680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 4062560 - 4062592
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    ||||||||||||||| |||||||||||||||||    
T  4062560 aaattacagggacggattgcatatttaagccta 4062592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 10771383 - 10771355
Alignment:
Q  314 aaattacagggacggtttgcatatttaag 342  Q
    |||||||||||||||||||||||||||||    
T  10771383 aaattacagggacggtttgcatatttaag 10771355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 46604714 - 46604670
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtc 113  Q
    |||| ||||||||||||||||||| || ||||||| |||||||||    
T  46604714 ttttcaatttcatccctttgcacttttacgtttttggttttggtc 46604670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 344
Target Start/End: Complemental strand, 42775697 - 42775420
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  42775697 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaac 42775598  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 267  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  42775597 tcacacttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 42775498  T
Q  268 agttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 344  Q
      ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||| ||| ||| ||||||||||||    
T  42775497 gattttgaaacaaaaaaagatacaaggacgatttgcaaaaacacgcgaaattacaggaacgttttacatatttaagcc 42775420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 42776789 - 42776878
Alignment:
Q  257 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  42776789 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacggtttgcatattaaagcct 42776878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 30381603 - 30381635
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    |||||||||||||||||||||||||||||||||    
T  30381603 aaattacagggacggtttgcatatttaagccta 30381635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 35988885 - 35988854
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  35988885 aaattacagggacggtttgcatatttaagcct 35988854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 16308630 - 16308564
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||| ||| |||||||||||||    
T  16308630 aaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcct 16308564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 31024354 - 31024388
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||||||||||||||||||| ||||||    
T  31024354 aaattacagggacggtttgcatatttaatcctaaa 31024388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 1418930 - 1418995
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||| |||||||    ||||| |||| |||||||||||||| ||| ||||||||||||    
T  1418930 aaaaaagatacagggacgaaaacaaaaaacacgtcaaattacagggacgatttacatatttaagcc 1418995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 4285190 - 4285157
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaa 347  Q
    ||||||||||||| ||||||||||||||||||||    
T  4285190 aaattacagggacagtttgcatatttaagcctaa 4285157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 30332348 - 30332283
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| ||||||||||||    
T  30332348 aaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcc 30332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 15795752 - 15795784
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    ||||||||||||| |||||||||||||||||||    
T  15795752 aaattacagggacagtttgcatatttaagccta 15795784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 28848632 - 28848554
Alignment:
Q  270 ttttgaaacaaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    ||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||| ||| ||||||||||||||||    
T  28848632 ttttgaaacaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaaa 28848554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 69 - 347
Target Start/End: Original strand, 43546512 - 43546792
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  43546512 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaaacttttgccaac 43546611  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 267  Q
    ||||| |  ||| |||||||||||||||||||||      ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  43546612 tcacacttcgccgcgtgtgtctccgtctgccaccacaatgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 43546711  T
Q  268 agttttgaaacaaaaaaga-tacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 347  Q
      |||| |||||||||| | |||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||||||    
T  43546712 gattttaaaacaaaaaaaaatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaa 43546792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 25008180 - 25008091
Alignment:
Q  257 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||   ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||||    
T  25008180 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 25008091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 43545417 - 43545340
Alignment:
Q  270 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 346  Q
    ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  43545417 ttttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagccta 43545340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 25009456 - 25009545
Alignment:
Q  257 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||| ||||||    
T  25009456 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatattaaagcct 25009545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 28849939 - 28850028
Alignment:
Q  257 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||| ||||||||||| |||||||||| ||||||    
T  28849939 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaagttacagggacgttttgcatattaaagcct 28850028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 31392123 - 31392057
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||||||||||| |||||||   |||||| |||| |||||||||||||| ||| |||||||||||||    
T  31392123 aaaaaagatacagggacgaaaaccaaaaacacgtcaaattacagggacgatttacatatttaagcct 31392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 31393653 - 31393719
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  31393653 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 31393719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 21715137 - 21715068
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| ||||||||||||||||    
T  21715137 aaaaaagatacagggacgaaaatcaaaaacacgccaaattacagggacgatttacatatttaagcctaaa 21715068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 3843259 - 3843299
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaat 354  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  3843259 aaattacagagacggtttgcatatttaagccaaaataaaat 3843299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 23966345 - 23966314
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  23966345 aaattacagggacggtttgcatatttaagcct 23966314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 26776340 - 26776309
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  26776340 aaattacagggacggtttgcatatttaagcct 26776309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 45277961 - 45278036
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc-taaataaaa 353  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||| |||||||||    
T  45277961 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccataaataaaa 45278036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 4706664 - 4706634
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  4706664 aaattacagggacggtttgcatatttaagcc 4706634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 4707497 - 4707527
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  4707497 aaattacagggacggtttgcatatttaagcc 4707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 21914667 - 21914701
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||||||||||||||| ||||||||||    
T  21914667 aaattacagggacggtttgcatatgtaagcctaaa 21914701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 20016778 - 20016810
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    ||||||||||||| |||||||||||||||||||    
T  20016778 aaattacagggacagtttgcatatttaagccta 20016810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 21716613 - 21716681
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 347  Q
    |||||||||||| |||||||   |||||| |||  |||||||||| ||| ||| |||||||||||||||    
T  21716613 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaagcctaa 21716681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 344
Target Start/End: Complemental strand, 193868 - 193591
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || | || ||||||| |||     |||||||||      
T  193868 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatcgctcttgacacataagcaagcttttgccaac 193769  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 267  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  193768 tcacacttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctattaacttacaaggat 193669  T
Q  268 agttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 344  Q
      ||||||||||||||| |||||| |||||| ||||||||| ||| |||||||||| |||| ||| ||||||||||||    
T  193668 gattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagagacgttttacatatttaagcc 193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 345
Target Start/End: Original strand, 39929249 - 39929414
Alignment:
Q  181 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 280  Q
    |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  39929249 cgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 39929348  T
Q  281 aa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    || |||||||| |||||| ||||||||| ||| ||||||||| ||||| ||| |||||||||||||    
T  39929349 aaaaagatacagggacgatttgcaaaaacacgcgaaattacatggacgttttacatatttaagcct 39929414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 39928008 - 39927931
Alignment:
Q  270 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 346  Q
    ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  39928008 ttttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagccta 39927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 55947425 - 55947358
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 346  Q
    |||||||||||| |||||||   ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  55947425 aaaaaagatacagggacgaaaaccaaaaatacgtcaaattacagggacgatttacatatttaagccta 55947358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 42889804 - 42889870
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||    ||||| ||||||| ||||||||||| ||| |||||||||||||    
T  42889804 aaaaaagatacaaggacgaaaacaaaaaacacgtgaacttacagggacgatttacatatttaagcct 42889870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 44251670 - 44251604
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  44251670 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 44251604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 52477675 - 52477641
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||||||||||||||||||||||||||    
T  52477675 aaattacagggacggtttgcatatttaagcctaaa 52477641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 10337169 - 10337101
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 347  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||| ||||    
T  10337169 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagtctaa 10337101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 15807686 - 15807655
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  15807686 aaattacagggacggtttgcatatttaagcct 15807655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 19994563 - 19994496
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 346  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| ||||||||||||||    
T  19994563 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccta 19994496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 347
Target Start/End: Complemental strand, 47848268 - 47848238
Alignment:
Q  317 ttacagggacggtttgcatatttaagcctaa 347  Q
    |||||||||||||||||||||||||||||||    
T  47848268 ttacagggacggtttgcatatttaagcctaa 47848238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 47864519 - 47864489
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  47864519 aaattacagggacggtttgcatatttaagcc 47864489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 48713456 - 48713522
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  48713456 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 48713522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 5236512 - 5236379
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccct-gaatctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    |||||||||||||||||||||| | || ||||||| || |||||||||    |||||||||||  || |||| ||||||| |||  || |||||||||      
T  5236512 tttttaatttcatccctttgcaattttgcgtttttggtcttggtccctcctttctagccactcatcatctctcttgacacataattctgcttttgccaac 5236413  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacc 201  Q
    ||||  |  ||||||||||||||| ||| |||||    
T  5236412 tcaccattcgccacgtgtgtctccatctaccacc 5236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 13507051 - 13506954
Alignment:
Q  20 aagaagatgaaaactacaatttttaaattaaaaattt-gatatttaagactttttaatttcatccctttgcactctttcgtttttcgttttggtccct 116  Q
    ||||||||||||| ||   ||||||||||  |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||||||  |||||||||||    
T  13507051 aagaagatgaaaaataatgtttttaaatttcaaattttgatgtttacgagtttttaatttcatccctatgcacttttgtgtttttgtttttggtccct 13506954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 13508429 - 13508526
Alignment:
Q  255 agcttacaaggagagttttgaaacaaaa-----aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 347  Q
    |||||||||||| |||||||||| ||||     ||||||||  ||||| ||||||||| |||  |||||| || |||  |||||||||||||||||||    
T  13508429 agcttacaaggacagttttgaaaaaaaaaaaaaaagatacacagacgatttgcaaaaacacgcaaaattatagagacattttgcatatttaagcctaa 13508526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 19996048 - 19996117
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||| |||| ||   |||||| |||  |||||||||||||| ||| ||||||||||||||||    
T  19996048 aaaaaagatacagggaccaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcctaaa 19996117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 33609338 - 33609402
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagc 343  Q
    ||||||||||||||||||||   |||||| ||| ||| ||||||||||  ||| |||||||||||    
T  33609338 aaaaaagatacaaggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagc 33609402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 47848856 - 47848888
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    |||||||||||||||||||||||||||| ||||    
T  47848856 aaattacagggacggtttgcatatttaaaccta 47848888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 52502435 - 52502407
Alignment:
Q  314 aaattacagggacggtttgcatatttaag 342  Q
    |||||||||||||||||||||||||||||    
T  52502435 aaattacagggacggtttgcatatttaag 52502407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 55948947 - 55949015
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 347  Q
    |||||||||||| |||||||   |||||| |||  |||||||| ||||| ||| |||||||||||||||    
T  55948947 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacaaggacgatttacatatttaagcctaa 55949015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 45981571 - 45981406
Alignment:
Q  181 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 280  Q
    ||||||||||||||||| |||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  45981571 cgtgtgtctccgtctgcaaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 45981472  T
Q  281 aaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||| ||||||||||||| ||||||||| ||| ||||||||| ||||| ||| |||||||||||||    
T  45981471 aaaaagatacaaggacgatttgcaaaaacacgcgaaattacaaggacgttttacatatttaagcct 45981406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 8391476 - 8391400
Alignment:
Q  270 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||||    
T  8391476 ttttgaaacaaaaaaagatacaaggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 8391400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 8392774 - 8392856
Alignment:
Q  257 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatt 338  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  8392774 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacggtttgcatatt 8392856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 348
Target Start/End: Original strand, 45982770 - 45982862
Alignment:
Q  257 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    ||||||||||   ||||||||||||| |||||||| ||| || ||||||||| | | ||||||||||||||| |||||||||| |||||||||    
T  45982770 cttacaaggatgattttgaaacaaaaaaagatacagggatgatttgcaaaaacatgcgaaattacagggacgatttgcatattaaagcctaaa 45982862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 3990874 - 3990910
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaata 350  Q
    |||||||||||||||||||||||||||| ||||||||    
T  3990874 aaattacagggacggtttgcatatttaaacctaaata 3990910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 25165929 - 25165890
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaa 353  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  25165929 aaattacagggacggtttgcatatttaagccgaaagaaaa 25165890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 25166775 - 25166806
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  25166775 aaattacagggacggtttgcatatttaagcct 25166806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 20289619 - 20289649
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  20289619 aaattacagggacggtttgcatatttaagcc 20289649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 53529528 - 53529594
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| |||||||||||||    
T  53529528 aaaaaagatacagggacgaaaactaaaaatacgccaaattacagggacgatttacatatttaagcct 53529594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 26052205 - 26052241
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaata 350  Q
    |||||||||||||||||||||||||||| || |||||    
T  26052205 aaattacagggacggtttgcatatttaaaccaaaata 26052241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 52935717 - 52935685
Alignment:
Q  313 gaaattacagggacggtttgcatatttaagcct 345  Q
    |||||||||||||||| ||||||||||||||||    
T  52935717 gaaattacagggacggattgcatatttaagcct 52935685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 349
Target Start/End: Complemental strand, 20587203 - 20587034
Alignment:
Q  181 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 280  Q
    |||||||||||||||||||||    | ||||||||| |||||||||  ||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  20587203 cgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacaggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 20587104  T
Q  281 aaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaat 349  Q
    |||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||| ||||    
T  20587103 aaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagccaaaat 20587034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 344
Target Start/End: Original strand, 20588241 - 20588518
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||     |||||||||      
T  20588241 tttttaatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaac 20588340  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 266  Q
    ||||| |   |||||||||||| |||||||||||    | ||||||||| ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  20588341 tcacacttcaccacgtgtgtctacgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 20588439  T
Q  267 gagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 344  Q
       ||||||||||||| ||||||||  ||||| ||||||||| ||| ||||||||||||||| ||| ||||||||||||    
T  20588440 tgattttgaaacaaaaaaagatacagagacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcc 20588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 28563441 - 28563375
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  28563441 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 28563375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 28917134 - 28917166
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    |||||||||||||||||||||||||||||||||    
T  28917134 aaattacagggacggtttgcatatttaagccta 28917166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 352
Target Start/End: Complemental strand, 2238012 - 2237973
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc-taaataaa 352  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  2238012 aaattacagggacggtttgcatatttaagccataaataaa 2237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 2238851 - 2238882
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  2238851 aaattacagggacggtttgcatatttaagcct 2238882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 21716470 - 21716439
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  21716470 aaattacagggacggtttgcatatttaagcct 21716439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 21720227 - 21720258
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  21720227 aaattacagggacggtttgcatatttaagcct 21720258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 24559581 - 24559620
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaa 353  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  24559581 aaattacagggacggtttgcatatttaagccaaaaaaaaa 24559620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 29090920 - 29090877
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaataaa 357  Q
    |||||||||||||||||||||||||||||| ||||  |||||||    
T  29090920 aaattacagggacggtttgcatatttaagcgtaaaataaataaa 29090877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 3149949 - 3149907
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaataa 356  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  3149949 aaattacaaggacggtttgcatatttaagcctttataaaataa 3149907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 6844091 - 6844169
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaataaaataaa 357  Q
    |||||||||||||||| |||   |||||| ||| ||| ||||| ||||  ||| |||||||||||||| ||||||||||    
T  6844091 aaaaaagatacaaggatgaaaaccaaaaacacgcgaacttacaaggaccttttacatatttaagcctagataaaataaa 6844169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 28916315 - 28916285
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  28916315 aaattacagggacggtttgcatatttaagcc 28916285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 45493026 - 45493095
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||  ||| ||||||||||||||||    
T  45493026 aaaaaagatacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaagcctaaa 45493095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 45500768 - 45500837
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||  ||| ||||||||||||||||    
T  45500768 aaaaaagatacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaagcctaaa 45500837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 28563652 - 28563604
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctg 117  Q
    |||||||||| ||||||||| ||  |||||||||| |||||||||||||    
T  28563652 tttttaattttatccctttgtaccttttcgtttttggttttggtccctg 28563604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 34591793 - 34591721
Alignment:
Q  276 aacaaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||||||||||||||    ||||||||   || ||||| ||||| ||| ||||||||||||||||    
T  34591793 aacaaaaaagatacaaggacgaaaacaaaaaatacacaaacttacatggacgatttacatatttaagcctaaa 34591721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 69 - 346
Target Start/End: Original strand, 8851 - 9130
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||||   |||||||||      
T  8851 tttttaatttcatccctctgcaattttgcggttttggttttggtccctcctttctagccactcatcatctctcttgacacataacaaagcttttgccaac 8950  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 266  Q
    ||||| |   |||||||||||||||||| |||||    | ||||||||| ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  8951 tcacacttcaccacgtgtgtctccgtctaccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 9049  T
Q  267 gagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 346  Q
       || |||||||||| |||||||| |||||| ||||||||| |||  |||||||||||||| |||||||||| |||||||    
T  9050 tgattctgaaacaaaaaaagatacagggacgatttgcaaaaacacgcaaaattacagggacgttttgcatattaaagccta 9130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 7763 - 7701
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaa 341  Q
    |||||||||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||    
T  7763 aaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaa 7701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 177 - 355
Target Start/End: Original strand, 10337 - 10516
Alignment:
Q  177 gccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaa 276  Q
    |||||||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | |||| |||||   |||||||    
T  10337 gccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttataaggatgattttgaa 10436  T
Q  277 acaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaataaaata 355  Q
    |||||| |||||||| |||||| ||||||||| ||| ||||||| || || | ||| |||||||||||||||||| ||||    
T  10437 acaaaaaaagatacagggacgatttgcaaaaacacgcgaaattatagagatgttttacatatttaagcctaaatataata 10516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 9108 - 9019
Alignment:
Q  257 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||   ||||||||||||||| ||||||||||||| ||||||||  ||| ||||||||||| ||| |||||||||| ||||||    
T  9108 cttacaaggatgattttgaaacaaaaaaagatacaaggacgatttgcaaaatcacgcgaaattacaggaacgttttgcatattaaagcct 9019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 8241 - 8330
Alignment:
Q  257 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||   ||||||||||||||| |||| | |||||| ||||||||| ||| ||||||||||||||| |||||||||| ||||||    
T  8241 cttacaaggatgattttgaaacaaaaaaagatatagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattcaagcct 8330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 338
Target Start/End: Complemental strand, 35505799 - 35505528
Alignment:
Q  69 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 167  Q
    |||||||||||||||||||||| | || || |||| ||||| ||| ||   | ||||||||||  || ||||||||| || ||| |   |||||||||      
T  35505799 tttttaatttcatccctttgcaattttgcgcttttggtttttgtctctcctttctagccactcatcatctcttttgaaacataagaaagcttttgccaac 35505700  T
Q  168 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 266  Q
    ||||| |   |||||| |||||||||||||||||    ||||||||||  ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  35505699 tcacacttcaccacgtctgtctccgtctgccaccacaacatttttgtagcgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 35505601  T
Q  267 gagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatt 338  Q
       ||||||||||||||| |||||| |||||| || |||||| ||| ||||||||||||||| ||||||||||    
T  35505600 tgattttgaaacaaaaaaagatacatggacgatttacaaaaacacgcgaaattacagggacgttttgcatatt 35505528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 25264405 - 25264338
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 346  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| ||||||||||||||    
T  25264405 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccta 25264338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 347
Target Start/End: Original strand, 35506824 - 35506990
Alignment:
Q  182 gtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaaa 281  Q
    ||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||   |||||||| |||    
T  35506824 gtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaataaa 35506923  T
Q  282 aaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 347  Q
    ||| |||| | |||||| ||||||||| |||  ||||||||  |||| ||| |||||||||||||||    
T  35506924 aaaagatatagggacgatttgcaaaaacacgcaaaattacaaagacgttttacatatttaagcctaa 35506990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 1939480 - 1939441
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaa 353  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  1939480 aaattacagggacagtttgcatatttaagcctaaaaaaaa 1939441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 3158031 - 3158098
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 346  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||| ||| ||||||||||||||    
T  3158031 aaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagccta 3158098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 23154338 - 23154369
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  23154338 aaattacagggacggtttgcatatttaagcct 23154369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 11761068 - 11761038
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  11761068 aaattacagggacggtttgcatatttaagcc 11761038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 23153578 - 23153548
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  23153578 aaattacagggacggtttgcatatttaagcc 23153548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 26635540 - 26635510
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  26635540 aaattacagggacggtttgcatatttaagcc 26635510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 9122753 - 9122721
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    |||||||||||||||||| ||||||||||||||    
T  9122753 aaattacagggacggtttccatatttaagccta 9122721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 37586752 - 37586724
Alignment:
Q  314 aaattacagggacggtttgcatatttaag 342  Q
    |||||||||||||||||||||||||||||    
T  37586752 aaattacagggacggtttgcatatttaag 37586724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 24051285 - 24051245
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaat 354  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  24051285 aaattacagggacggtttgcatatttaagcctaaaaaaaat 24051245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 7678636 - 7678707
Alignment:
Q  274 gaaacaaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||| ||||||||||||||||| ||  ||||||| |||  |||||||||||||| ||| |||||||||||||    
T  7678636 gaaaaaaaaaagatacaaggacaaaaagcaaaaacacgccaaattacagggacgatttacatatttaagcct 7678707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 2956229 - 2956293
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagc 343  Q
    ||||||||||||||||||||   |||||| || | |||||||||||||| ||| |||||||||||    
T  2956229 aaaaaagatacaaggacgaaaaccaaaaacacatcaaattacagggacgatttacatatttaagc 2956293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 9699185 - 9699225
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaat 354  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  9699185 aaattacagggacggtttgcatatttaaacctaaattaaat 9699225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 353
Target Start/End: Complemental strand, 31994823 - 31994675
Alignment:
Q  206 catttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaa-acaaaaaagatacaaggacgaattgcaa 304  Q
    ||||||||||| ||| ||||| |||| |||| | |||||||  |  || | |||| |||||  |||||||| | |||||||||||| |||  ||||||||    
T  31994823 catttttgtaacgggtgttaacgggagggactaattgcaaatggttaacaacttataaggatggttttgaagaaaaaaaagatacagggaaaaattgcaa 31994724  T
Q  305 aaatacgtgaaattacagggacggtttgcatatttaagcctaaataaaa 353  Q
    ||| ||| ||| ||||| | ||| |||||||||||||||| || |||||    
T  31994723 aaacacgcgaacttacatgaacgttttgcatatttaagccaaattaaaa 31994675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 6159784 - 6159753
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  6159784 aaattacagggacggtttgcatatttaagcct 6159753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 28302193 - 28302224
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  28302193 aaattacagggacggtttgcatatttaagcct 28302224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 28509880 - 28509849
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcct 345  Q
    ||||||||||||||||||||||||||||||||    
T  28509880 aaattacagggacggtttgcatatttaagcct 28509849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 1258434 - 1258500
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 345  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  1258434 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 1258500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 29979254 - 29979284
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  29979254 aaattacagggacggtttgcatatttaagcc 29979284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 343
Target Start/End: Original strand, 24052024 - 24052053
Alignment:
Q  314 aaattacagggacggtttgcatatttaagc 343  Q
    ||||||||||||||||||||||||||||||    
T  24052024 aaattacagggacggtttgcatatttaagc 24052053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 19084114 - 19084178
Alignment:
Q  279 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagc 343  Q
    |||||||||||| |||| ||   |||||| |||  |||||||||||||||||| |||||||||||    
T  19084114 aaaaaagatacagggacaaaaaccaaaaacacgctaaattacagggacggtttacatatttaagc 19084178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 22352991 - 22352959
Alignment:
Q  314 aaattacagggacggtttgcatatttaagccta 346  Q
    |||||| ||||||||||||||||||||||||||    
T  22352991 aaattatagggacggtttgcatatttaagccta 22352959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 10336 - 10302
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaa 348  Q
    |||||||||||||||||||||||||||||||||||    
T  10336 aaattacagggacggtttgcatatttaagcctaaa 10302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 386 - 416
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcc 344  Q
    |||||||||||||||||||||||||||||||    
T  386 aaattacagggacggtttgcatatttaagcc 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 1110 - 1070
Alignment:
Q  314 aaattacagggacggtttgcatatttaagcctaaataaaat 354  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  1110 aaattacagggacgaattgcatatttaagcctaaaaaaaat 1070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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