View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_52 (Length: 244)
Name: NF18398_low_52
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37901413 - 37901187
Alignment:
| Q |
1 |
ttcttcattgcattgtaccggacattcacaaattcttctcaactcttcttacccaccctcatttggctaactcgtgccgtcgtgcggatccttagatttc |
100 |
Q |
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| T |
37901413 |
ttcttcattgcattgtaccagacattcacaaattcttctcaactcttcttacccaccctcatttggctaacttgtgccgtcgtgcggatccttagatttc |
37901314 |
T |
|
| Q |
101 |
taatctctgctcgaggaaggatgaaagtgtacaaagcagtaggtgtt--gttaattacaagcacatttgcatgtcattctttggtccttagcatgtttgt |
198 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37901313 |
taatctctccttgaggaaggatgaaagtgtacaaagcagtaggtgttgagttaattacaagcacatttgcatgtcattctttggtccttagcatgtttgt |
37901214 |
T |
|
| Q |
199 |
ttctgcattgtcatgtgctgaatgcac |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37901213 |
ttctgcattgtcatgtgctgaatgcac |
37901187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37907924 - 37907698
Alignment:
| Q |
1 |
ttcttcattgcattgtaccggacattcacaaattcttctcaactcttcttacccaccctcatttggctaactcgtgccgtcgtgcggatccttagatttc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37907924 |
ttcttcattgcattgtaccagacattcacaaattcttctcaactcttcttacccaccctcatttggctaacttgtgccgtcgtgcggatccttagatttc |
37907825 |
T |
|
| Q |
101 |
taatctctgctcgaggaaggatgaaagtgtacaaagcagtaggtgtt--gttaattacaagcacatttgcatgtcattctttggtccttagcatgtttgt |
198 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37907824 |
taatctctccttgaggaaggatgaaagtgtacaaagcagtaggtgttgagttaattacaagcacatttgcatgtcattctttggtccttagcatgtttgt |
37907725 |
T |
|
| Q |
199 |
ttctgcattgtcatgtgctgaatgcac |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37907724 |
ttctgcattgtcatgtgctgaatgcac |
37907698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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