View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_59 (Length: 237)
Name: NF18398_low_59
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 8570121 - 8570012
Alignment:
| Q |
18 |
atgaaactgatgaagagatgtcatgaagagattttgattaagcgatttt--------gattttgggataaagcccgtctgggaaaagtgattggatgaga |
109 |
Q |
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| T |
8570121 |
atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttgacaaagcgattttgggataaagcccttctgagaaaagtgattctatgaga |
8570022 |
T |
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| Q |
110 |
gagatatctg |
119 |
Q |
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|||||||||| |
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| T |
8570021 |
gagatatctg |
8570012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 54189092 - 54189201
Alignment:
| Q |
18 |
atgaaactgatgaagagatgtcatgaagagattttgattaagcgattttg--------attttgggataaagcccgtctgggaaaagtgattggatgaga |
109 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||| |||||| |
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| T |
54189092 |
atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttgacaaagctattttgggataaagcccttctgagaaaagtgattctatgaga |
54189191 |
T |
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| Q |
110 |
gagatatctg |
119 |
Q |
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| T |
54189192 |
gagatatctg |
54189201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 28696081 - 28695972
Alignment:
| Q |
18 |
atgaaactgatgaagagatgtcatgaagagattttgattaagcgatttt--------gattttgggataaagcccgtctgggaaaagtgattggatgaga |
109 |
Q |
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| T |
28696081 |
atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttgacaaagcgattttgggataaagcccttctgagaaaagtgattctatgaga |
28695982 |
T |
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| Q |
110 |
gagatatctg |
119 |
Q |
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| T |
28695981 |
gagatatctg |
28695972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 3368185 - 3368235
Alignment:
| Q |
18 |
atgaaactgatgaagagatgtcatgaagagattttgattaagcgattttga |
68 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
3368185 |
atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttga |
3368235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 9891834 - 9891884
Alignment:
| Q |
18 |
atgaaactgatgaagagatgtcatgaagagattttgattaagcgattttga |
68 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
9891834 |
atgaaactgatgaaatgatgtcatgaagcgattttgattaagcgattttga |
9891884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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