View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18398_low_62 (Length: 227)
Name: NF18398_low_62
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_62 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 48087826 - 48088048
Alignment:
| Q |
5 |
cacaatgtacatccaaattaaaccccccaaaaatgcattaaaggggtgagccaacaatagaagcttggtagctaaggacaatattggtgaaataaatatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48087826 |
cacaatgtacatccaaattaaaccccccaaaaatgcattaaaggggtgagccaacaatagaagcttggtagctaaggacaatattggtgaaataaatatc |
48087925 |
T |
|
| Q |
105 |
taagggaccaagtctataaactcatcaaacttttgtgacattaactctgcctccaaatgcgatatacggagtaaattaatctaattacaattttgaccat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48087926 |
taagggaccaagtctataaactcatcaaacttttgtgacattaactctgcctccaaatgcgatatacggagtaaattaatctaattacaattttgaccat |
48088025 |
T |
|
| Q |
205 |
gatccatcatgaaataaaacaaa |
227 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48088026 |
gatccatcatgaaataaaacaaa |
48088048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 149964 - 149880
Alignment:
| Q |
151 |
ctgcctccaaatgcgatatacggagtaaattaat----ctaattac---aattttgaccatgatc----catcatgaaataaaac |
224 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
149964 |
ctgcctccaaatgcgctatacggagtaaattaattaatctaattactacaattttgaccatgatcgatccatcatgaaataaaac |
149880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University