View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_9 (Length: 456)
Name: NF18398_low_9
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 3021543 - 3021840
Alignment:
| Q |
19 |
tgaaggcatgcatgatttgcttctaaaaattgcaaacgagcctttacgttcagctcctccttccccaacaaattatggtattggtagttataactggggt |
118 |
Q |
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| T |
3021543 |
tgaagacatgcatcatttgcttctaagtattgccaatgagcctttacgttcagctcctccttccccaacaaattatggta------gttataactggggt |
3021636 |
T |
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| Q |
119 |
gacatggagatttttgatactcaattagtttcactttggaacttctctatttgatac---------------tcttcttggatgtggttgattttgtaaa |
203 |
Q |
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| T |
3021637 |
gacatggagatttttgatactcaattagtttcactttggaacttctctatttgaaacgcaagcacactacactctttttggatgcgattgattttgtaaa |
3021736 |
T |
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| Q |
204 |
acttacnnnnnnnnnagttaagtttgaaataatattgaagtcgcacataaacatagtttgttggattgaacatgaaacttgaaccacctaccatataaag |
303 |
Q |
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| T |
3021737 |
acttactttttttttagttcagtttgaaataatattgaagtcgcacataaacatagtttgttggattgaacatgaaacttgaaccacctactatataaag |
3021836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 3038412 - 3038595
Alignment:
| Q |
19 |
tgaaggcatgcatgatttgcttctaaaaattgcaaacgagcctttacgttcagctcctccttccccaacaaattatggtattggtagttataactggggt |
118 |
Q |
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| T |
3038412 |
tgaagacatgcatcatttgcttctaagtattgccaatgagcctttacgttcagctcctccttccccaacaaattatggt------agttataactggggt |
3038505 |
T |
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| Q |
119 |
gacatggagatttttgatactcaattagtttcactttggaacttctctatttgatactcttcttggatgtggttgattttgtaaaactta |
208 |
Q |
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| T |
3038506 |
gacatggagatttttgatactcaattagtttcactttggaacttctctatttgatactcttcttggatgtggttgattttgtaaaactta |
3038595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 355 - 447
Target Start/End: Original strand, 3021888 - 3021980
Alignment:
| Q |
355 |
gttgatctttatatatgtaagtgatgtaatctcttgatttaaactacatttctcatattcaatacaattttcatttcattttataacctatgt |
447 |
Q |
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| T |
3021888 |
gttgatctttatatatgtaagtgatgtaatctcttgatttaaactacatttctcatattcgatacaattttcatttcattttataacctatgt |
3021980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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