View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18399_high_6 (Length: 278)
Name: NF18399_high_6
Description: NF18399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18399_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 37718779 - 37718889
Alignment:
| Q |
21 |
ataaattcataatgggacgaaataaaagaaagatataaataaaatgatgagttaaataagtgtaggaaaaggtgggatgtttaaatattatggttgatta |
120 |
Q |
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| T |
37718779 |
ataaatttataatgggacgaaataaaagaaagatataaataaaatgatgagttaaataagtgtaggaaaaagtgggatgttcaaatattatggttgatta |
37718878 |
T |
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| Q |
121 |
taaaataacgt |
131 |
Q |
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| T |
37718879 |
taaaataacgt |
37718889 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 28617351 - 28617400
Alignment:
| Q |
213 |
tccatgagagatatcatttacttccatttttaaatccttaaccatacact |
262 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28617351 |
tccatgagagatatcatttacttccacttttaaatccttaaccatacact |
28617400 |
T |
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