View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18399_high_8 (Length: 254)
Name: NF18399_high_8
Description: NF18399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18399_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 22766193 - 22765973
Alignment:
| Q |
12 |
caaaggaaattgggttccagttactccaatatcagatgctcttgttgtcaatgttggagatgttatagaggtacatcnnnnnnn-cttaacactcatgtt |
110 |
Q |
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| T |
22766193 |
caaaggaaattgggttccagttattccaatatcagatgctcttgttgtcaatgttggagatgttatagaggtacattttatttttcttaatactcatgtt |
22766094 |
T |
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| Q |
111 |
ctcaagaaaaagggtccaaggtaatctgaagttcggatgatagaagttaaacctaacaaaaaattgatcgaggaagtatttaaagttgagtatcattaac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22766093 |
ctcaagaaaaagggtccaaggtaatctgaagttcggatgataggagtaaaacctaatagaaaattgatcgaggaagtatttaaagttgagtatcattaac |
22765994 |
T |
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| Q |
211 |
ggaagctgattaaactcatca |
231 |
Q |
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|||||||||||||||||||| |
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| T |
22765993 |
tgaagctgattaaactcatca |
22765973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 22775709 - 22775638
Alignment:
| Q |
13 |
aaaggaaattgggttccagttactccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
84 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
22775709 |
aaaggaaattgggtacccgttactccaatatcagatgctctagttgtcaatgtcggagatgtaatagaggta |
22775638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 22778870 - 22778793
Alignment:
| Q |
7 |
agaagcaaaggaaattgggttccagttactccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
84 |
Q |
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|||| ||||||||||||||| || |||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
22778870 |
agaaacaaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggta |
22778793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 16084177 - 16084249
Alignment:
| Q |
12 |
caaaggaaattgggttccagttactccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
84 |
Q |
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||||||||||||||| || || ||||| ||| |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
16084177 |
caaaggaaattgggtaccggtaactcccatagcagatgctctagttgtcaatgttggagatgcaatagaggta |
16084249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 22770578 - 22770506
Alignment:
| Q |
12 |
caaaggaaattgggttccagttactccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
84 |
Q |
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|||| |||||||||| ||| ||||||||||| ||| |||| | || || |||||||||||||| ||||||||| |
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| T |
22770578 |
caaaagaaattgggtaccaattactccaataccaggtgctttagtggttaatgttggagatgtaatagaggta |
22770506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 23278110 - 23278182
Alignment:
| Q |
12 |
caaaggaaattgggttccagttactccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
84 |
Q |
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||||||||||||||| ||| ||| ||||||| || ||||| | || |||||| |||||||||| ||||||||| |
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| T |
23278110 |
caaaggaaattgggtaccaattaatccaataccaaatgctttagtggtcaatcttggagatgtaatagaggta |
23278182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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