View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18399_low_1 (Length: 665)

Name: NF18399_low_1
Description: NF18399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18399_low_1
NF18399_low_1
[»] chr5 (1 HSPs)
chr5 (12-647)||(12275826-12276461)


Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 12 - 647
Target Start/End: Complemental strand, 12276461 - 12275826
Alignment:
Q  12 catcatcacgaatcatacgagatgacgaccttactagaaaaccaaaggtattatctggtgcgctcttgactccctcggtccctctaccctcctcacatac 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12276461 catcatcacgaatcatacgagatgacaaccttactagaaaaccaaaggtattatctggtgcgctcttgactccctcggtccctctaccctcctcacatac 12276362  T
Q  112 atcaataccatttcacaatgttaattaccacactctaactcccatacaaaacacacatcaattagttctacacaacttcaattttccaatacaccccaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12276361 atcaataccatttcacaatgttaattaccacactctaactcccatacaaaacacacatcaattagttctacacaacttcaattttccaatacaccccaca 12276262  T
Q  212 tacttaaattccccactcataatccatcttttatttaaaaacactcatacccttgctccttcccttactactctagtctattacctacaattcatgttct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12276261 tacttaaattccccactcataatccatcttttatttaaaaacactcatacccttgttccttcccttactactctagtctattacctacaattcatgttct 12276162  T
Q  312 catagttggaaaataattaaattagcaatggaaatttgagacgaaaataataaaatgagtctttaattaacttgtcactatacaacgtgacagtaagaca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  12276161 catagttggaaaataattaaattagcaatggaaatttgagacgaaaataataaaatgagtctttaattaacttgtcactatacgacgtgactgtaagaca 12276062  T
Q  412 gattttataatttttcgtcaataatttccgttgctaattcaactttttcgtacgaatttctctaaccataactaaaaatccataatccaaaagggaggaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12276061 gattttataatttttcgtcaataatttccgttgctaattcaactttttcgtacgaatttctctaaccataactaaaaatccataatccaaaagggaggaa 12275962  T
Q  512 ggaacaatttcaatgacttgaacaaggtgtgcacactacttggaaggtgcactagtggttggttcattgcaagaaccaacaaagcaattgttgttactgc 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12275961 ggaacaatttcaatgacttgaacaaggtgtgcacactacttggaaggtgcactagtggttggttcattgcaagaaccaacaaagcaattgttgttactgc 12275862  T
Q  612 tgctacaaagagcactttcaatttgatgaagggtat 647  Q
    ||||||||||||||||||||||||||||||||||||    
T  12275861 tgctacaaagagcactttcaatttgatgaagggtat 12275826  T

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