View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18399_low_2 (Length: 562)
Name: NF18399_low_2
Description: NF18399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18399_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 146 - 548
Target Start/End: Complemental strand, 4196626 - 4196224
Alignment:
| Q |
146 |
caagtatcaatagttcttttcttatcagtatcaacagcatgcaaacagctaagacaattagcaatcgaatctaagcatctaagcaatttgcaaaacagtt |
245 |
Q |
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| T |
4196626 |
caagtatcaatagttcttttcttatcagtatcaacagcatgcaaacagctaagacaattagcaatcgaatctaagcatctaagcaatttgcaaaacagtt |
4196527 |
T |
|
| Q |
246 |
attattcttacgaagcttcactcaattggaacattcatccatgagtattaacagcttcccaaactaaatttctaggaactggtttagtaagatccctcgc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196526 |
attattcttacgaagcttcactcaattggaacattcatccatgagtattaacagcttcccaaactaaatttctaggaactggtttagtaagatccctcgc |
4196427 |
T |
|
| Q |
346 |
ctgcaaagccgcattcctcaaagtctgaatagtaagcacattagccttccagaaagacacacaattgtaaggaagattatgtttcttgcacagatcctta |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196426 |
ctgcaaagccgcattcctcaaagtctgaatagtaagcacattagccttccagaaagacacacaattgtaaggaagattatgtttcttgcacagatcctta |
4196327 |
T |
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| Q |
446 |
accaaaggtgaaatcttcctcaaattacatcgtggaagacgcggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatccaag |
545 |
Q |
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| T |
4196326 |
accaaaggtgaaatcttcctcaaattacatcgtggaagacgcggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatccaag |
4196227 |
T |
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| Q |
546 |
aag |
548 |
Q |
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||| |
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| T |
4196226 |
aag |
4196224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 4196749 - 4196698
Alignment:
| Q |
23 |
gcataacacaaattgttatattgtagaaatatccatggccacataaggaact |
74 |
Q |
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| T |
4196749 |
gcataacacaaattgttatgttgtagaaatatccatggccacataaggaact |
4196698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 4187294 - 4187218
Alignment:
| Q |
299 |
gcttcccaaactaaatttctaggaactggtttagtaagatccctcgcctgcaaagccgcattcctcaaagtctgaat |
375 |
Q |
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| T |
4187294 |
gcttcccaaactaaatttctcggaatcggtttagtaagatcccgagcttgcaaagcagcattcctcaacgtctgaat |
4187218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 4187915 - 4187866
Alignment:
| Q |
23 |
gcataacacaaattgttatattgtagaaatatccatggccacataaggaa |
72 |
Q |
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| T |
4187915 |
gcataacacaaattgttatgtagtacaaatatccattgccgcataaggaa |
4187866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 543
Target Start/End: Original strand, 24416839 - 24416894
Alignment:
| Q |
488 |
ggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatcca |
543 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| |||||||||||||| |
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| T |
24416839 |
ggaaacaaatgatgttcaagctgaaactgcaaaccaccaaagaaccaatccatcca |
24416894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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