View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18399_low_3 (Length: 332)
Name: NF18399_low_3
Description: NF18399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18399_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 313558 - 313874
Alignment:
| Q |
1 |
cagtcacacaaaaaataataccttttctggtcaaatcactgtaatgagtatacttcttgaagtcaactggaacaaagattaactctggacatagcttccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
313558 |
cagtcacacaaaaaataataccttttctggtcaaatcactgtaatgagtatacttcttgaagtcaactggaacaaagattaactctggacatagcttccg |
313657 |
T |
|
| Q |
101 |
tgcaataaagccaggcatggcagaacgaactccaaatttcctggcctgtataacgacaaaaggaggatcgtaaattgtcaaattccatgctacaacagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
313658 |
tgcaataaagccaggcatggcagaacgaactccaaatttcctggcctgtataaagacaaaaggaggatcgtaaattgtcaaattcaatgctacaacagag |
313757 |
T |
|
| Q |
201 |
ttggagcagattaattactcaatcattaaccaaatcgattcaagcttataatatatagagaaaagaaacctcataattggcagtggatatcatagacatg |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
313758 |
ttggagcagattaattactcaatcattaatcaaatcgattcaagcttataatatatggagaaaagaaacctcataattggcagtggatatcatagacatg |
313857 |
T |
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| Q |
301 |
ctgccaacagccattgg |
317 |
Q |
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||||||||||||||||| |
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| T |
313858 |
ctgccaacagccattgg |
313874 |
T |
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