View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18399_low_4 (Length: 329)
Name: NF18399_low_4
Description: NF18399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18399_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 42450071 - 42450381
Alignment:
| Q |
18 |
actgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| |
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| T |
42450071 |
actgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctttctcattttcactaagtcgggacactggtatacccg |
42450170 |
T |
|
| Q |
118 |
tcaataggctaacaaccaaagctattaggtctggtt---------ttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgcatcttc |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42450171 |
tcaataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaagcttttatcggtgctatcttcaagtcgttgaattgcatcttc |
42450270 |
T |
|
| Q |
209 |
cacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgc |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450271 |
cacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgc |
42450370 |
T |
|
| Q |
309 |
ttcagcctttg |
319 |
Q |
| |
|
||||||||||| |
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| T |
42450371 |
ttcagcctttg |
42450381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 742815 - 743133
Alignment:
| Q |
18 |
actgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccg |
117 |
Q |
| |
|
||||| |||||||||||||| ||||| || || ||||||||||||| |||||||||| ||||||||||||||||||||| | ||| ||||||||| || | |
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| T |
742815 |
actgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttctttctcattttcgccaatttgggtcactggtatgccgg |
742914 |
T |
|
| Q |
118 |
tcaataggctaacaaccaaagctattaggtctggt-----------------tttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaatt |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| | || | ||||||||| ||||||| ||| ||||||||| |||| | |||||| |
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| T |
742915 |
tcaataggctaacaaccatagcaattaggttttgtactccagcacagcagtttctgtcaacattaagctctcatcagtgctatctccaagcagctgaatt |
743014 |
T |
|
| Q |
201 |
gcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcac |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
743015 |
gcatcttccacgtcatcaatcgcaccatatcgtagacttgcagctctttctatatcatgccgcctctcagcctcctgtagagacaagataagctcttcgc |
743114 |
T |
|
| Q |
301 |
gtttctgcttcagcctttg |
319 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
743115 |
ttttcagcttcagcctttg |
743133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 45467616 - 45467496
Alignment:
| Q |
197 |
aattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctct |
296 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||| ||||||||||| | |||| |||||| |
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|
| T |
45467616 |
aattgcagtttccacctcttcaattgcaccatatcgcaggtccgcagctcttgctagatcataccgcctctctgcctcctgtagtgcaaagaggagctct |
45467517 |
T |
|
| Q |
297 |
tcacgtttctgcttcagcctt |
317 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
45467516 |
tcacgtttctgcttcagcctt |
45467496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 45467807 - 45467700
Alignment:
| Q |
27 |
tcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccgtcaataggc |
126 |
Q |
| |
|
||||||||||| ||||| |||| | |||||||||||||||| ||| || |||||||||||| ||| || | | |||||||||||| ||| || ||| |
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|
| T |
45467807 |
tcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcattttggccgagcctagtcactggtataccagtccatcggc |
45467708 |
T |
|
| Q |
127 |
taacaacc |
134 |
Q |
| |
|
|||||||| |
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|
| T |
45467707 |
taacaacc |
45467700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 10045762 - 10045647
Alignment:
| Q |
198 |
attgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctctt |
297 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| ||||| | |||| ||||||| |
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| T |
10045762 |
attgcattttccacctcttcaattgcaccatatcgtaggtctgcagctctggctagatcataccgcctctcagcctcttgtagtgcaaagaggagctctt |
10045663 |
T |
|
| Q |
298 |
cacgtttctgcttcag |
313 |
Q |
| |
|
|||||||||| ||||| |
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| T |
10045662 |
cacgtttctgtttcag |
10045647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 10045964 - 10045847
Alignment:
| Q |
17 |
aactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtataccc |
116 |
Q |
| |
|
|||||| || ||||||||||| ||||| | || || ||||| |||||||||| ||| ||||||| ||||||| ||| | || | |||||||||||| |
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| T |
10045964 |
aactgcttggtcttgtcccacaactctagtatgcaatctgtctccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggtataccg |
10045865 |
T |
|
| Q |
117 |
gtcaataggctaacaacc |
134 |
Q |
| |
|
||| || ||||||||||| |
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|
| T |
10045864 |
gtccatcggctaacaacc |
10045847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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