View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1839_high_1 (Length: 687)
Name: NF1839_high_1
Description: NF1839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1839_high_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Complemental strand, 53557497 - 53556983
Alignment:
| Q |
17 |
gatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557497 |
gatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgc |
53557398 |
T |
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| Q |
117 |
actaatccaagattactattataatcaaaatagtttcaagtttccatatactacaaaattagagatagatttcacataattttctcgtagtatacaattt |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557397 |
actaaaccaagattactattataatcaaaatagtttcaagtttccatatactacaaaattagagatagatttcacataattttctcgtagtatacaattt |
53557298 |
T |
|
| Q |
217 |
tcttgtttgatcagcaaacaaataattttattcaaacccagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557297 |
tcttgtttgatcagcaaacaaataattttattcaaactcagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgat |
53557198 |
T |
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| Q |
317 |
caatacatacatatatataatctaagaagtactagtaattacaaaaattaagnnnnnnnntatttaccaattttttgaggaagagcaatccaatttcctc |
416 |
Q |
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| T |
53557197 |
caatacataca----tataatctaagaagtactagta---acaaaaattaagaaaaaaaatatttaccaattttttgaggaagagcaatccaatttcctc |
53557105 |
T |
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| Q |
417 |
cagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacc |
516 |
Q |
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| T |
53557104 |
cagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacagcatggagctctacc |
53557005 |
T |
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| Q |
517 |
catcttttttgtattgttaaga |
538 |
Q |
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||||||||||||||| |||||| |
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| T |
53557004 |
catcttttttgtattattaaga |
53556983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 8e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 556 - 687
Target Start/End: Original strand, 31981814 - 31981945
Alignment:
| Q |
556 |
gaaattaattgaattgagattctgacttgtgaatttgttctattgtacagtggtttaggatggaaatcttcctccttatttcaacaatccaattgcttca |
655 |
Q |
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| T |
31981814 |
gaaattaattgaattgagattctgacttgtgaatttgttctattgtacagtggtttaggatggaaatcttcccccttatttcaacaatccaattgcttca |
31981913 |
T |
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| Q |
656 |
accttctttcttctccattcaaaccaaaaccc |
687 |
Q |
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| T |
31981914 |
accttctttcttctccattcaaaccaaaaccc |
31981945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 388 - 519
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
| Q |
388 |
tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg |
487 |
Q |
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|||||||||||||| |||||||||||| |||||||||| |||| || || |||||| | | ||||||||| || ||||| |||||||||||||| |
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| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca |
40820203 |
T |
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| Q |
488 |
ttagccttgtcacaacatggagctctacccat |
519 |
Q |
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| T |
40820204 |
tttgctttgtcacagcaaggagctcttcccat |
40820235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 380 - 528
Target Start/End: Complemental strand, 4685489 - 4685341
Alignment:
| Q |
380 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt |
479 |
Q |
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| T |
4685489 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt |
4685390 |
T |
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| Q |
480 |
tcttcacgttagccttgtcacaacatggagctctacccatcttttttgt |
528 |
Q |
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| T |
4685389 |
tcttcacgtttgctttgtcacaacaaggagctctacccatgtttgttgt |
4685341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 519
Target Start/End: Original strand, 4612012 - 4612088
Alignment:
| Q |
443 |
ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccat |
519 |
Q |
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| T |
4612012 |
ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat |
4612088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 519
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
| Q |
392 |
tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag |
491 |
Q |
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| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg |
5113196 |
T |
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| Q |
492 |
ccttgtcacaacatggagctctacccat |
519 |
Q |
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| T |
5113195 |
ctttgtcacagcaaggagctcttcccat |
5113168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 525
Target Start/End: Original strand, 41208793 - 41208920
Alignment:
| Q |
398 |
agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt |
497 |
Q |
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|||| |||||| |||||||||||||||| | | || ||||| || ||| | |||||||||||||||||||| || |||||||| || ||||| |||| |
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| T |
41208793 |
agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt |
41208892 |
T |
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| Q |
498 |
cacaacatggagctctacccatcttttt |
525 |
Q |
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| T |
41208893 |
cacagcaaggagatcttcccattttttt |
41208920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 47847050 - 47847119
Alignment:
| Q |
453 |
catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatctt |
522 |
Q |
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| T |
47847050 |
catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccatctt |
47847119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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