View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1839_high_5 (Length: 293)
Name: NF1839_high_5
Description: NF1839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1839_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 96 - 276
Target Start/End: Complemental strand, 35876022 - 35875842
Alignment:
| Q |
96 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35876022 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
35875923 |
T |
|
| Q |
196 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagct |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35875922 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagct |
35875842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 96 - 276
Target Start/End: Complemental strand, 24450223 - 24450043
Alignment:
| Q |
96 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450223 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
24450124 |
T |
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| Q |
196 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagct |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450123 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagct |
24450043 |
T |
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