View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1839_low_1 (Length: 780)
Name: NF1839_low_1
Description: NF1839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1839_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 274 - 763
Target Start/End: Original strand, 55983218 - 55983714
Alignment:
| Q |
274 |
cagccatgttaacgttttcccaaaagcagctcaacagtgtccttggaaatcaatgtagttcctattttgtgcataaggattcagagatgcataagcgatc |
373 |
Q |
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| T |
55983218 |
cagccatgttaacgttttcccaaaagcagctcaacagtgtccttggaaatcaatgtagttcctattttgtgcataaggattcagagatacataagcgatc |
55983317 |
T |
|
| Q |
374 |
aacgatgtagaacctgttacgtgtaagggaa-----ttagaggcacacacgtggattgcnnnnnnnn--tctccgaactcactctaccccttgctacaca |
466 |
Q |
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| T |
55983318 |
aacgatgtagaacctgttacgtgtaagggaagggaattagaggcacacacgtggattgcaaaaaaaaaatctccgaactcactctaccccttgctacaca |
55983417 |
T |
|
| Q |
467 |
caacacttccattcatttgcagataatgatacgaccgacaataaagagagatttctcgtgctcttcttacttaaatcgtgataccttcaccaacaatgat |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55983418 |
caacacttccattcatttgcagataatgatacgaccgacaataaagagagatttctcgtgctcttcttacttaaatcgtgataccttcaccaacaatgat |
55983517 |
T |
|
| Q |
567 |
atgtttcaaaccaatatacatgaaacattcatcagcaaacagaactcaaattattgaatatcaagtcttctaattgaacatgttatagattgccatagat |
666 |
Q |
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| T |
55983518 |
atgtttcaaaccaatatacatgaaacattcatcagcaaacagaactcaaattattgaatatcaagtcttctaattgaacatgttatagattgccatagat |
55983617 |
T |
|
| Q |
667 |
atcatagaacaataatcttatcaatgaatgggcgaaaatttcaatcttctcaatctattgataacaaatagcactaaaagaaattgtttctgcattg |
763 |
Q |
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| T |
55983618 |
atcatagaacaataatcttatcaatgaatgggcgaaaatttcaatcttctcaatctattgataacaaatagcactaaaagaaattgtttctgcattg |
55983714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 55983113 - 55983219
Alignment:
| Q |
99 |
tactaagagtgactttatttcctatgtctctttccaattctaggggaaattttacaatggtggatgttttgatcaggccagaaaatcgatcttgaaggat |
198 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55983113 |
tactacgagtgacgctatttcctatgtctctttccaattctaggggaaactttacaatggtggatgttttgatcaggccagaaaatcgatcttgaaggat |
55983212 |
T |
|
| Q |
199 |
cttctca |
205 |
Q |
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||||||| |
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| T |
55983213 |
cttctca |
55983219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 199 - 713
Target Start/End: Original strand, 6298142 - 6298660
Alignment:
| Q |
199 |
cttctcaaagttttctccaacaaacttggtctcaaacataaggaagcaacagggcatgctctctttggaaatacacagccatgttaacgttttcccaaaa |
298 |
Q |
| |
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||||||||| ||||||||||||| || ||||||| |||||||||||||||||| ||| |||| ||| ||||| ||||| |||| ||| | || |
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| T |
6298142 |
cttctcaaaattttctccaacaagattaatctcaaatttaaggaagcaacagggcaagcttgctttctaaacacacaaccatgataacatttctctggaa |
6298241 |
T |
|
| Q |
299 |
gcagctcaacagtgtccttggaaatcaatgtagttcctattttgtgcataaggattcagagatgcataagcgatcaacgatgtagaacctgttacgtgta |
398 |
Q |
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|||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||| ||| | |||||||||||||||||| ||||||| | | | ||| |
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| T |
6298242 |
gcagctcaacagcgtcctcggaaatcaatgcagttcctattt-gtacataaggattccgagctacataagcgatcaacgatgcagaacctataatgcgta |
6298340 |
T |
|
| Q |
399 |
agggaattagaggcacacacgtggattgcnnnnnnnntctccgaactcactctaccccttgctacacacaacacttccattcatttgcagataatgatac |
498 |
Q |
| |
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||||||||||||||||||| |||||||| | ||||||| ||| | |||||||| | |||||||||||| ||||||||| ||| |
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| T |
6298341 |
tgggaattagaggcacacacatggattgcaaaaaggg--ccagaactcattcttctgattgctacagatgacacttccattcctttgcagatcgagatct |
6298438 |
T |
|
| Q |
499 |
gaccgacaataaagagagatttctcgtgctcttcttacttaaatcgtgataccttcaccaacaatgatatgtttcaaaccaatatacatgaaacattcat |
598 |
Q |
| |
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||| || |||||| |||||||||||||||||||||||||| || ||| ||||||| ||| |||||||| |||||||||||| ||||| ||||||||||| |
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| T |
6298439 |
gactgataataaaaagagatttctcgtgctcttcttacttcaaccgtaatacctttacccacaatgatgtgtttcaaaccattatac--gaaacattcat |
6298536 |
T |
|
| Q |
599 |
cagcaaacagaactc--aaattattgaat-------atcaagtcttctaattgaacatgttatagattgccatagatatcatagaacaataatcttatca |
689 |
Q |
| |
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| |||||||||| || | |||||||||| ||||| || ||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6298537 |
ctgcaaacagaattcagagattattgaatttcaagattcaagactgctatttggacatgttatagattgccatagatatcatagaacgataatcttatca |
6298636 |
T |
|
| Q |
690 |
atgaatgggcgaaaatttcaatct |
713 |
Q |
| |
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|| | |||| || |||||||||| |
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| T |
6298637 |
atatacgggcaaacatttcaatct |
6298660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 6297965 - 6298059
Alignment:
| Q |
50 |
tcaaaccagaccctttagacatttggccttgttctcaaatcaagcaatgtactaagagtgactttatttcctatgtctctttccaattctagggg |
144 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||| | ||| ||||||||||||||||| | |||||||| | |||||||||||||||||||| |
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| T |
6297965 |
tcaaaccagaccctttcaacacttggccttgttctccagtcaggcaatgtactaagagtggcgttatttccaacatctctttccaattctagggg |
6298059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 6314786 - 6314839
Alignment:
| Q |
339 |
tttgtgcataaggattcagagatgcataagcgatcaacgatgtagaacctgtta |
392 |
Q |
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||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
6314786 |
tttgtgcataaggattccgagccacataagcgatcaacgattcagaacctgtta |
6314839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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