View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1839_low_10 (Length: 242)
Name: NF1839_low_10
Description: NF1839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1839_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 303605 - 303850
Alignment:
| Q |
1 |
tcatcaaagggaacaagacttttccttaaccattaaatctgaagaggactctcaagatagttgcaagactaattccacccctggtgctagaggatctcac |
100 |
Q |
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| T |
303605 |
tcatcaaagggaacaaaacttttccttaaccattaaatctgaagaggactctcaagatagttgcaagactaattccacccctggtgctagaggatctcac |
303704 |
T |
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| Q |
101 |
aaaagaaggtactaatcattaaaaacaatcatgttaattgtttgctagctaggaatatgaaca--------------nnnnnnngttaatttgcagaaaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
303705 |
aaaagaaggtactaatcattaaaaacaatcatgttaattgtttgctagctaggaatatgaacatttttttatttattgatcatggttaatttgcagaaaa |
303804 |
T |
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| Q |
187 |
actagagaaacgtgtgaggaagtgtcagaaagaccaacagatgatg |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
303805 |
actagagaaacgtgtgaggaagtgtcagaaagaccaacagatgatg |
303850 |
T |
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