View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1839_low_3 (Length: 496)
Name: NF1839_low_3
Description: NF1839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1839_low_3 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 53557307 - 53556983
Alignment:
| Q |
16 |
tatacaattttcttgtttgatcagcaaacaaataattttattcaaacccagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53557307 |
tatacaattttcttgtttgatcagcaaacaaataattttattcaaactcagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataatt |
53557208 |
T |
|
| Q |
116 |
cccttgtgatcaatacatacatatatataatctaagaagtactagtaattacaaaaattaagnnnnnnnntatttaccaattttttgaggaagagcaatc |
215 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53557207 |
cccttgtgatcaatacatacatata----atctaagaagtactagtaa---caaaaattaagaaaaaaaatatttaccaattttttgaggaagagcaatc |
53557115 |
T |
|
| Q |
216 |
caatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53557114 |
caatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacagcatg |
53557015 |
T |
|
| Q |
316 |
gagctctacccatcttttttgtattgttaaga |
347 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
53557014 |
gagctctacccatcttttttgtattattaaga |
53556983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 365 - 496
Target Start/End: Original strand, 31981814 - 31981945
Alignment:
| Q |
365 |
gaaattaattgaattgagattctgacttgtgaatttgttctattgtacagtggtttaggatggaaatcttcctccttatttcaacaatccaattgcttca |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31981814 |
gaaattaattgaattgagattctgacttgtgaatttgttctattgtacagtggtttaggatggaaatcttcccccttatttcaacaatccaattgcttca |
31981913 |
T |
|
| Q |
465 |
accttctttcttctccattcaaaccaaaaccc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31981914 |
accttctttcttctccattcaaaccaaaaccc |
31981945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
| Q |
197 |
tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg |
296 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |||| || || |||||| | | ||||||||| || ||||| |||||||||||||| |
|
|
| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca |
40820203 |
T |
|
| Q |
297 |
ttagccttgtcacaacatggagctctacccat |
328 |
Q |
| |
|
|| || |||||||| || |||||||| ||||| |
|
|
| T |
40820204 |
tttgctttgtcacagcaaggagctcttcccat |
40820235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 4685489 - 4685341
Alignment:
| Q |
189 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt |
288 |
Q |
| |
|
|||||||||||||| || ||||||||||| || || ||||| |||| | ||| ||||||||||||||| ||| ||||||||| |||||||| || |||| |
|
|
| T |
4685489 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt |
4685390 |
T |
|
| Q |
289 |
tcttcacgttagccttgtcacaacatggagctctacccatcttttttgt |
337 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
4685389 |
tcttcacgtttgctttgtcacaacaaggagctctacccatgtttgttgt |
4685341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 4612012 - 4612088
Alignment:
| Q |
252 |
ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccat |
328 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| |||| || || | ||||||||||| |||||||| ||||| |
|
|
| T |
4612012 |
ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat |
4612088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
| Q |
201 |
tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag |
300 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| ||| |||||||| |||||| |||||||||||||||| ||||| || ||||| || || || | |
|
|
| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg |
5113196 |
T |
|
| Q |
301 |
ccttgtcacaacatggagctctacccat |
328 |
Q |
| |
|
| |||||||| || |||||||| ||||| |
|
|
| T |
5113195 |
ctttgtcacagcaaggagctcttcccat |
5113168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 334
Target Start/End: Original strand, 41208793 - 41208920
Alignment:
| Q |
207 |
agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt |
306 |
Q |
| |
|
|||| |||||| |||||||||||||||| | | || ||||| || ||| | |||||||||||||||||||| || |||||||| || ||||| |||| |
|
|
| T |
41208793 |
agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt |
41208892 |
T |
|
| Q |
307 |
cacaacatggagctctacccatcttttt |
334 |
Q |
| |
|
|||| || |||| ||| ||||| ||||| |
|
|
| T |
41208893 |
cacagcaaggagatcttcccattttttt |
41208920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 47847050 - 47847119
Alignment:
| Q |
262 |
catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatctt |
331 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| || |||||||| || || || || |||||||| |
|
|
| T |
47847050 |
catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccatctt |
47847119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University