View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1839_low_5 (Length: 412)
Name: NF1839_low_5
Description: NF1839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1839_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 5 - 400
Target Start/End: Original strand, 1584471 - 1584865
Alignment:
| Q |
5 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1584471 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
1584570 |
T |
|
| Q |
105 |
tataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaattctaaagtggtaaataaattttgaaaatatttagatctcttaccaac |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1584571 |
tataatatattcataaaatattaattaatgtga-tgcaacatcaatatgtaattctagagtgataaataaatttcgaaaatatttagatctcttaccaac |
1584669 |
T |
|
| Q |
205 |
aagggtgacaaggtcttgagtgttaaggccttttgctgcaaacttttgtttctgctcatcaacagaatcaccaggagcaggcaagttattgacatcagaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1584670 |
aagggtgacaaggtcttgagtgttaaggccttttgttgcaaacttttgtttctgctcatcaacagaatcaccaggagcaggcaagttattgacatcagaa |
1584769 |
T |
|
| Q |
305 |
gcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagaccaccactctacaatgcatacataaatcaattataggtccatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1584770 |
gcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagaccaccactctacaatgcatacataaatcaattataggtccatatt |
1584865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 1593412 - 1593216
Alignment:
| Q |
5 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1593412 |
atgaagggtctattgaaggatcagctgcaccatttgtagtaaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
1593313 |
T |
|
| Q |
105 |
tataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaattctaaagtggtaaataaattttgaaaatatttagatctcttacca |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1593312 |
tataatatattcataaaatattaattaatgtg-atgcaacatcaatatgtaattctagagtgataaataaattttgaaaatatttagatctcttacca |
1593216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 196 - 400
Target Start/End: Complemental strand, 1592411 - 1592209
Alignment:
| Q |
196 |
cttaccaacaagggtgacaaggtcttgagtgttaaggccttttgctgcaaacttttgtttctgctcatcaacagaatcaccaggagcaggcaagttattg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
1592411 |
cttaccaacaagggtgacaaggtcttgagtgttgaggccttttgctgcaaacttttgtttctgcacatcaacagaatcactaggagcgggcaagttattg |
1592312 |
T |
|
| Q |
296 |
acatcagaagcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagaccaccactctacaatgcatacataaatcaattataggtcc |
395 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1592311 |
acgtcagaagcctgtgacacgcgtccgtctctacgtccagtaagaacttgccaactaagaccaccactctacaatgcatacataaatcaat--taggtcc |
1592214 |
T |
|
| Q |
396 |
atatt |
400 |
Q |
| |
|
||||| |
|
|
| T |
1592213 |
atatt |
1592209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University