View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1839_low_9 (Length: 254)
Name: NF1839_low_9
Description: NF1839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1839_low_9 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 24712235 - 24712451
Alignment:
| Q |
11 |
gatgaacgggagctgattaagtggggtggtagacgtttttataggtagggaggtggatgttttattggtggttttattggtgtttttgtgggtggtagtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
24712235 |
gatgaacgggagctgattaagtggggtggtagacgttttt-taggtagggaggtggatgttt------------tattggtgttgttgtgggtggtagtg |
24712321 |
T |
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| Q |
111 |
agctcttggtgtttctgttgtaggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtgcttttagttgattttgtgtttggttgcttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24712322 |
agctcttggtgtttctgttgtaggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtgcttttagttgattttgtgtttggttgcttg |
24712421 |
T |
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| Q |
211 |
agtgtggatggttttcgagctgagcctttt |
240 |
Q |
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|||| || |||||||||||||||||||||| |
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| T |
24712422 |
agtgcgggtggttttcgagctgagcctttt |
24712451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 31424023 - 31424168
Alignment:
| Q |
93 |
tttttgtgggtggtagtgagctcttggtgtttctgttgtaggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtg-cttttagttga |
191 |
Q |
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|||| |||| |||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||| ||||| |||| |
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| T |
31424023 |
ttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttg-tcttgggtctgtatccatcgtcgctagctcttggtgccttttggttg- |
31424120 |
T |
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| Q |
192 |
ttttgtgtttggttgcttgagtgtggatggttttcgagctgagcctttt |
240 |
Q |
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| T |
31424121 |
ttttgtgtatgggtgcttgagtctgggtggtttt-gagttgagcctttt |
31424168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 17820294 - 17820065
Alignment:
| Q |
11 |
gatgaacgggagctgattaagtggggtggtagacgtttttataggtagggaggtggatgttttattggtggttttattggtgtttttgtgggtggtagtg |
110 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| |||| |||| ||| || ||| |||| |||||||||||| |
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| T |
17820294 |
gatgaacgggagcttattatatggggtggtagacatttttttaggtagggaggtggatgttatattagtgggttt-ttagtgattttatgggtggtagtg |
17820196 |
T |
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| Q |
111 |
agctcttggtgtttctgttgtaggctgcctt-tgtttttgggtccatatccgtcgtcgctagctcttggtgcttttagttgattttgtgtttggttgctt |
209 |
Q |
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| T |
17820195 |
atctctcggtgtttcagttgtaggccgctttatatgtttgggtccatatctgtcgtcgctaactcttggtgcttttggttgattttgtgtttgggagctt |
17820096 |
T |
|
| Q |
210 |
gagtgtggatggttttcgagctgagcctttt |
240 |
Q |
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|||||||| ||||||||||||| |||||||| |
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| T |
17820095 |
gagtgtgggtggttttcgagcttagcctttt |
17820065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 3679106 - 3679190
Alignment:
| Q |
91 |
tgtttttgtgggtggtagtgagctcttggtgtttctgttgtaggctgcctttgtttttgggtccatatccgtcgtcgctagctctt |
176 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||| || | || |||||| ||||||| ||||||||||| |||| |
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| T |
3679106 |
tgtttttgtgggtggtggtgagctattggtgtttctgttgtaggtcgcttatg-ttttggatccatatttgtcgtcgctagatctt |
3679190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 31503660 - 31503540
Alignment:
| Q |
88 |
tggtgtttttgtgggtggtagtgagctcttggtgtttctgttgtaggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtgc-tttta |
186 |
Q |
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| T |
31503660 |
tggtgttttggtggatggtggtgagctctagatgtttctattgtttgccgcctctgtttt-gagtccatatccgccatcgctagctcttgttgcattttg |
31503562 |
T |
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| Q |
187 |
gttgattttgtgtttggttgct |
208 |
Q |
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|||| |||||| ||||| |||| |
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| T |
31503561 |
gttgcttttgtatttgggtgct |
31503540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 15817791 - 15817723
Alignment:
| Q |
88 |
tggtgtttttgtgggtggtagtgagctcttggtgtttctgttgtaggctgcctttgtttttgggtccata |
157 |
Q |
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| T |
15817791 |
tggtgtttttgtgggtggtggtgagctcttggtgtttatgttgtaagccgccttt-attttgggtccata |
15817723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 5746420 - 5746488
Alignment:
| Q |
108 |
gtgagctcttggtgtttctgttgtaggctgcctttgtttttgggtccatatccgtcgtcgctagctcttg |
177 |
Q |
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| T |
5746420 |
gtgaactctttgtgtttctgttgttgatcgcctttgtgtt-ggatccatatccgtcgtcgctagctcttg |
5746488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 46811 - 46839
Alignment:
| Q |
149 |
gggtccatatccgtcgtcgctagctcttg |
177 |
Q |
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| T |
46811 |
gggtccatatccgtcgtcgctagctcttg |
46839 |
T |
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