View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_high_1 (Length: 685)
Name: NF18400_high_1
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 23680045 - 23679727
Alignment:
| Q |
7 |
tcgaagaatatgagaatagtgtgcctgacgtgaaaaatgtataattgtaacataacatgtaatgtacctattctatcatcttcaatatttaatgaagaga |
106 |
Q |
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| T |
23680045 |
tcgaagaaaatgagaatagtgtgcctgacgtgaaaaatgtataattgtaacataacatgtaatgtacctattctatcatcttcaatatttaatgaagaga |
23679946 |
T |
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| Q |
107 |
tgttttgtctattggcatgatatatatgtccatgtgttttcacatattc-aaaacgttgatttacaaatgttgctgaaatacattatttatagcttctct |
205 |
Q |
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| T |
23679945 |
tgttttgtctattggcatgatatatatgtcaatgtgttttcacatattcaaaaacgttgatttacaaatgttgctgaaat--attatttatagcttctct |
23679848 |
T |
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| Q |
206 |
ttgttggttccgttgattttgaatttcccaaagaatagtggaatgtgtcttagaacg-nnnnnnnnacaatgtatgtgagtgaggataaaacatggacga |
304 |
Q |
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| T |
23679847 |
ttgttggttccattgattttgaatttcccaaagaatagtggaatgtgtcttagaacgtttttttttactatgcatgtgagtgaggataaaacatggatga |
23679748 |
T |
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| Q |
305 |
aaaaac--tgtttattgttaa |
323 |
Q |
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| T |
23679747 |
aaaaactttgtttattgttaa |
23679727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 338 - 578
Target Start/End: Complemental strand, 23679659 - 23679422
Alignment:
| Q |
338 |
attaatcagtatttaacaactaatccatatgtggatatgctagtatgggttacaactgttgtggtgacccacccaatctaacttgacgtattggtgggtt |
437 |
Q |
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| T |
23679659 |
attaatcaatatttaacaactaatccatatgtggatatgctagtatgggttacaactgttgtggtgaccca----atctaacttgacttattggtgggtt |
23679564 |
T |
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| Q |
438 |
attagattgataagaaaaaataactcacttattcaggtcaaagtgggtctaatctcagtaagcactttatcctacctttctatttttatctt-ttttcct |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
23679563 |
attagattgataagaaaaaataactcacttattcaggtcaaagtgggtctaatctcagtaagaactttatcctacctttctatttttatctttttttcct |
23679464 |
T |
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| Q |
537 |
tcgtcatgtgttttgatctcaaccaaatttatattttgctaa |
578 |
Q |
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| T |
23679463 |
tcgtcatgtgttttgatctcaaccaaatttatattttgctaa |
23679422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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