View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18400_high_12 (Length: 384)
Name: NF18400_high_12
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_high_12 |
 | |
|
| [»] scaffold0689 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 9231218 - 9230844
Alignment:
| Q |
1 |
tttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9231218 |
tttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatgga |
9231119 |
T |
|
| Q |
101 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9231118 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
9231019 |
T |
|
| Q |
201 |
aagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttca |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9231018 |
aagatattttggaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttca |
9230919 |
T |
|
| Q |
301 |
gacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230918 |
gacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
9230844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 18351370 - 18351744
Alignment:
| Q |
1 |
tttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351370 |
tttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatgga |
18351469 |
T |
|
| Q |
101 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351470 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
18351569 |
T |
|
| Q |
201 |
aagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttca |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351570 |
aagatattttggaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttca |
18351669 |
T |
|
| Q |
301 |
gacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351670 |
gacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
18351744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 16902710 - 16902904
Alignment:
| Q |
1 |
tttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16902710 |
tttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
16902809 |
T |
|
| Q |
101 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16902810 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgtgtaagtgtcgacacaattttcttgtgcacgt |
16902904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 2914796 - 2915168
Alignment:
| Q |
1 |
tttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2914796 |
tttaatattgttagatacttttttagacctattggcaatactacgtgggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
2914895 |
T |
|
| Q |
101 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2914896 |
tccaagcgaattcttcggaaaaaattgtgtctttcaccacggaatcctataagtgagattttgagtaagtgtctacacaattttcttgtgcacgtgtgcg |
2914995 |
T |
|
| Q |
201 |
aagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttca |
300 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2914996 |
aagatattttggaaaatgagtcacca-tgataccaacccatctgagggagttcttcgttttaatccttatccttcttcttgttatcggatatctcgttca |
2915094 |
T |
|
| Q |
301 |
gacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
375 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2915095 |
g-cacatcttttctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
2915168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40808184 - 40808404
Alignment:
| Q |
1 |
tttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40808184 |
tttaatatttttagatactcttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
40808283 |
T |
|
| Q |
101 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40808284 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctacaagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
40808383 |
T |
|
| Q |
201 |
aagatattttagaaaatgagt |
221 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
40808384 |
aagatattttggaaaatgagt |
40808404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 21584860 - 21584900
Alignment:
| Q |
270 |
tccttcttcttgttaccggatatctcgttcagacacatctt |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
21584860 |
tccttcttcttgttactggatatctcgttcatacatatctt |
21584900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 7999657 - 7999283
Alignment:
| Q |
1 |
tttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
7999657 |
tttaatatttttagatacttttttagacctattgacgatactacgtaggagtcctaaatttcaacaatttgtgtccatttttcatgatattagagatgga |
7999558 |
T |
|
| Q |
101 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||| ||| ||||||| |
|
|
| T |
7999557 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacagaatcctataagtgagattttgagtaagtgtttacataattttcttgagcatgtgtgcg |
7999458 |
T |
|
| Q |
201 |
aagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttca |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7999457 |
aagatattttgaaaaatgagtcaccattgatatctacccatctgagggagttcttcgttttagtccttatccttcttcttgttaccggatatctcgttta |
7999358 |
T |
|
| Q |
301 |
gacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat |
375 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7999357 |
gacaaatcttttctttgtttcttgattctctaatgagttacagaaagagttcgaagaagtcaaatctttgatgat |
7999283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30242156 - 30242372
Alignment:
| Q |
1 |
tttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
30242156 |
tttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaattttaacaatttgtatc-atttttcatgatattagggatgaa |
30242254 |
T |
|
| Q |
101 |
tccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
200 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30242255 |
tccaagcgaattctttggaaaaaattgtgtctttcactacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcg |
30242354 |
T |
|
| Q |
201 |
aagatattttagaaaatg |
218 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
30242355 |
aatatattttggaaaatg |
30242372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 1771 - 2156
Alignment:
| Q |
5 |
atatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatcca |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |||| |||| || ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
1771 |
atatttttagatactttttcagacctattgccgatactaagtagcagtc---------aaaaatttgtatccatttttcatgatattatgcatggatcag |
1861 |
T |
|
| Q |
105 |
a---------gcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgt |
195 |
Q |
| |
|
| ||||||||||| | |||||||||||||| ||| | |||||| |||||||||||||||||||||||| ||| ||||||||| || |
|
|
| T |
1862 |
atatatcatggcgaattcttcagaaaaaattgtgtcttccacaatggaatctgataagtgagatttcgagtaagtgtttacataattttcttctg----- |
1956 |
T |
|
| Q |
196 |
gtgcgaagatat--ttta--gaaa--atgagtcaccattgatatcgacccatctgag---------------ggagttcttcgttttaatccttatcctt |
274 |
Q |
| |
|
| |||||| || || | |||| |||||||||||||||||||||| |||||||| ||||||| || || ||||||| ||||| |
|
|
| T |
1957 |
-tccgaagaaatgattcatcgaaataatgagtcaccattgatatcgacacatctgagatcgccaaatgttcaggagttcctctattcaatccttttcctt |
2055 |
T |
|
| Q |
275 |
cttcttgttaccggatatctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatga |
374 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||||| |||||||||| ||| || || |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
2056 |
cttcttgttgctggatatctcgttcgtacacatcttctctttgtttcccgagcctatagtgagttacagacagagttcgaaaaggtcaaatctttgatga |
2155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 10627118 - 10627065
Alignment:
| Q |
49 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10627118 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
10627065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 2612139 - 2612073
Alignment:
| Q |
66 |
aatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctt |
133 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||||||| |
|
|
| T |
2612139 |
aatttgtttccatttttcatgatattaggg-tggatccgaacgaattcttcgaaaaatattgtgtctt |
2612073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University