View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_high_15 (Length: 308)
Name: NF18400_high_15
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 7873145 - 7872839
Alignment:
| Q |
1 |
cctaaactcaccatcta--ctatgctcaattttttcaattgttagggttttgattataagaagcagtaatcaagtaacgtataagtacacaaaaatttaa |
98 |
Q |
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| T |
7873145 |
cctaaactcaccatctatactatgctcaattttttcaattgttagggttttgattataagaagcagtaatcaagtaacttataagtacacaaaaatttaa |
7873046 |
T |
|
| Q |
99 |
ccgacaaattaggagtcaatgaaac--acgttatcttttgg-------aagnnnnnnnnntcaaggaaacaaactcatattgagctgnnnnnnntgaaag |
189 |
Q |
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| T |
7873045 |
ccgacaaattaggagtcaatgaaacaaacgttatcttttggaaaagaaaaaaaaaactaatcaagaaaacaaactcatattgagctgaaaaaaatgaaag |
7872946 |
T |
|
| Q |
190 |
ttctaaactaattttaaaattcacgttcaaatagcatcaagtgatttttgtggtagccaaacaaaaatcttagtctctaaatctaattcctaactctttc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
7872945 |
ttctaaactaattttaaaattcacgttcaaatagcatc-agtgatttttgtggtagccaaacaaaaatctcagtctctaaatctaattcctaaccctttc |
7872847 |
T |
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| Q |
290 |
cctctctg |
297 |
Q |
| |
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|||||||| |
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| T |
7872846 |
cctctctg |
7872839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 7475709 - 7475749
Alignment:
| Q |
20 |
atgctcaattttttcaattgttagggttttgattataagaa |
60 |
Q |
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||||||| |||||| |||||||||||||||||| ||||||| |
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| T |
7475709 |
atgctcagttttttgaattgttagggttttgatgataagaa |
7475749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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