View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_high_2 (Length: 649)
Name: NF18400_high_2
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_high_2 |
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| [»] scaffold0321 (2 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 4 - 470
Target Start/End: Complemental strand, 16469 - 16003
Alignment:
| Q |
4 |
ttgaggagcagcacagatataggacgtggaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgcatatgcctatggtataatcata |
103 |
Q |
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| T |
16469 |
ttgaagagcagtacaaatataggacgtgaaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgcatatgcctatggtataatcata |
16370 |
T |
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| Q |
104 |
cttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgcagcagtaacccacaaagaacgc |
203 |
Q |
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| T |
16369 |
cttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgcagcagtaacccacaaagaacgc |
16270 |
T |
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| Q |
204 |
tgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggccggtggaggtggaggaagaggtgacttcatc |
303 |
Q |
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| T |
16269 |
tgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggcctgtggaggtggaggaagaggtgacttcatc |
16170 |
T |
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| Q |
304 |
ggtggaggtgcaggaagaggtgacttcataggagcctgctgatgtggaggtggaggtgaaggaatgtgtgtgaagttaacgaatggattttgtggtgatg |
403 |
Q |
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| T |
16169 |
ggtggaggtgcaggaagaggtgacttcataggagcctgctgatgtggaggtggaggtgaaggaatgtgtgtgaagttaacgaatggattttgtggtgatg |
16070 |
T |
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| Q |
404 |
gagcataatctcctaccaccagtgtagccaaacacagccacagtaaaagtaccttcaaaaaagtgaa |
470 |
Q |
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| T |
16069 |
gagcataatctccaaccaccagtgtagccaaacacagccacagtaaaagtaccttaaaaaaagtgaa |
16003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 490 - 631
Target Start/End: Complemental strand, 15927 - 15786
Alignment:
| Q |
490 |
ttatatacaaacgttatctaccttgcttcttatttgtttttgacgaaaaaataataaagagaactgctatatatagaataatagaaacaatgttaagcat |
589 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15927 |
ttatatacaaactttatctaccttgcttcttatttgtttttgacgaaaaaataataaagagaactgctatatatagaataatagaaacaatgttaagcat |
15828 |
T |
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| Q |
590 |
tgctatatcgtttaccaacaaaagaggattcacctctatcat |
631 |
Q |
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| T |
15827 |
tgctatatcgtttaccgacaaaagaggattcacctctatcat |
15786 |
T |
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