View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_high_20 (Length: 302)
Name: NF18400_high_20
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 21145378 - 21145211
Alignment:
| Q |
117 |
aacaaattggtgcataaagtaaaacacaaattgtatctaccaaagatcagtgacttcctgtctcttattatcttatgtcattaagtatagcacaaaacgt |
216 |
Q |
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| T |
21145378 |
aacaaattggggcataaagtaaaacacaaattgtatctaccaaagatcagtgacttcctgtttcttattatcttatgtcattaagtatagcacaaaacgt |
21145279 |
T |
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| Q |
217 |
gctctccatcttttgacataaagagaagcnnnnnnnnntattgtgatatacaaatgacctaataatctaat |
287 |
Q |
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| T |
21145278 |
gctctccatcttttgacataaagagaagc---aaaaaatattgtgatatacaaatgacctcataatctaat |
21145211 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 21145580 - 21145492
Alignment:
| Q |
30 |
agttaagcttcattaactgaattagaagaacttttatatatgaaacgaaatnnnnnnnnttaagtgaaaggggtgtgaaatttacctaac |
119 |
Q |
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| T |
21145580 |
agttaagcttcattaactgaattagaagaacttttatacatgaaacgaaat-aaaaaaattaagtgaaagggaggtgaaatttacctaac |
21145492 |
T |
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