View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_high_4 (Length: 565)
Name: NF18400_high_4
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 15 - 557
Target Start/End: Original strand, 48069909 - 48070451
Alignment:
| Q |
15 |
aaaaagaacaagaacttgatcaaccattacgaccaaaaaacctttctggtaccatcaaaaagtgtcttaaaaaatgcatgagtgtttttcgcgacgatag |
114 |
Q |
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| T |
48069909 |
aaaaagaacaagaacttgatcaaccattacgaccaaaaaacctttctggtaccatcaaaaagtgtcttaaaaaatgcatgagtgtttttcgcgacgatag |
48070008 |
T |
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| Q |
115 |
tgttaagaaaaacatgcctttaccggtggttctacacgaaccgaattggtaccaagggcaaaaatggagaggagcattggtcaaggaagagaagcatcag |
214 |
Q |
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| T |
48070009 |
tgttaagaaaaacatgcctttaccggtggttctacacgaaccgaattggtaccaagggcaaaaatggagaggagcattggtcaaggaagagaagcatcag |
48070108 |
T |
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| Q |
215 |
agacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtcagcaataataaggcattgaagttat |
314 |
Q |
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| T |
48070109 |
agacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtgagcaataataaggcattgaagttat |
48070208 |
T |
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| Q |
315 |
caggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaagag |
414 |
Q |
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| T |
48070209 |
caggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaagag |
48070308 |
T |
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| Q |
415 |
tccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttatagt |
514 |
Q |
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| T |
48070309 |
tccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttatagt |
48070408 |
T |
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| Q |
515 |
agtccttataataaacccaaaggtgattttgattttgatgatg |
557 |
Q |
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| T |
48070409 |
agtccttataataaacccaaaggtgattttgattttgatgatg |
48070451 |
T |
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