View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_high_5 (Length: 550)
Name: NF18400_high_5
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 26400348 - 26400030
Alignment:
| Q |
20 |
ttttgccaagtctatattttatgtattgaccagaaaaattatatgctcaaaccctaataattttttgattgatttatgataacatattttcaaaatgggt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26400348 |
ttttgccaagtctatattttatgtattgaccagaaaaattatatgctcaaaccctaataattttttgattcatttatgataacatattttcaaaatgggt |
26400249 |
T |
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| Q |
120 |
aatacctataaatagttcttgagatggtacaaagtgtgtcctggaatccccatcactcannnnnnnnnnnggtgcctttgccacatacgaaaagtgtaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26400248 |
aatacctataaatagttcttgagatggtacaaagtgtgtcctggaatccccatcactca-ttttttttttggtgcctttgccacatacgaaaagtgtaaa |
26400150 |
T |
|
| Q |
220 |
tacattaaccagtattaagaaatgatttatattctgatgtcaaaatagtaagatattctttaagctcttatggtatcaaacttactttctgcacctaatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26400149 |
tacattaaccagtattaagaaatgatttatattctgatgtcaaaatagtaagatattctttaagctcttatggtatcaaacttactttctgcacctaatt |
26400050 |
T |
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| Q |
320 |
aaccatttaaagagatataa |
339 |
Q |
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|||||||||||||||||||| |
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| T |
26400049 |
aaccatttaaagagatataa |
26400030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 338 - 543
Target Start/End: Complemental strand, 26399992 - 26399787
Alignment:
| Q |
338 |
aagtatacatagtgagtcctaccactttgtaggtcccaccattattaattatttatatgttttttcaaacttcactgtgtcgtgatcttttcgaatggaa |
437 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||| || |
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| T |
26399992 |
aagtatatatagtgagtcctaccacttagtaggtcccaccactattaattatttatatgttttttcaaacttcattgtgtcttgatctttccgaatgaaa |
26399893 |
T |
|
| Q |
438 |
gaaatggagaggatcttaactcataaagttgtactagtaagttaaatcagtttgcatctttcattatatggaaaaattgttgatgttgttgtattgctga |
537 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26399892 |
gaaatggagaggatcttaactcataaagttgtacaagtaagttaaatcagtttgcatctttcattatatggaaaaattgttgatgttgttgtattgctta |
26399793 |
T |
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| Q |
538 |
tgatgt |
543 |
Q |
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|||||| |
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| T |
26399792 |
tgatgt |
26399787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 30271450 - 30271387
Alignment:
| Q |
107 |
tttcaaaatgggtaatacctataaatagttcttgagatggtacaaagtgtgtcctggaatcccc |
170 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||||||| |
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| T |
30271450 |
tttcaaaatgggaaatacctataaatagctcctgagatggtacaaagtgagtcctggaatcccc |
30271387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 543
Target Start/End: Complemental strand, 30271017 - 30270950
Alignment:
| Q |
475 |
taagttaaatcagtttgcatctttcattatatggaaaaattgttgatgttgttgtattgctgatgatgt |
543 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||||||||||| ||||||| || || ||||||| |
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| T |
30271017 |
taagttaaataagtttgcatcttctataatatggaaaaattgttgat-ttgttgtctttcttatgatgt |
30270950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 30271141 - 30271074
Alignment:
| Q |
253 |
ctgatgtcaaaatagtaagatattctttaagctct-tatgg-tatcaaacttactttctgcacctaat |
318 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| | ||||| |||||||||| ||||||||||||||| |
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| T |
30271141 |
ctgatgtcaaaatagtaaagtattttttaagctttgtatgggtatcaaacttgctttctgcacctaat |
30271074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 409
Target Start/End: Original strand, 5047418 - 5047472
Alignment:
| Q |
354 |
tcctaccactttgtaggtcccaccattattaattatttatatgttttttcaaactt |
409 |
Q |
| |
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|||||||||| ||| ||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
5047418 |
tcctaccactatgtgggtcccaccatcattaattattt-tatattttttcaaactt |
5047472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 24782194 - 24782124
Alignment:
| Q |
389 |
tttatatgttttttcaaacttcactgtgtcgtgatcttttcgaatggaagaaatggagaggatcttaactc |
459 |
Q |
| |
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| T |
24782194 |
tttatattttatttcaaacttctttgtgtctttatctttccaaatggaataaatggagaggatcctaactc |
24782124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 31749164 - 31749198
Alignment:
| Q |
141 |
agatggtacaaagtgtgtcctggaatccccatcac |
175 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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| T |
31749164 |
agatggtacaaagtgagtcctggaatccccatcac |
31749198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 4888513 - 4888456
Alignment:
| Q |
346 |
atagtgagtcctaccactttgtaggtcccaccattattaattat-ttatatgtttttt |
402 |
Q |
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|||||| ||||||||||| |||||||||||||| ||||||||| || |||||||||| |
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| T |
4888513 |
atagtgggtcctaccactaagtaggtcccaccatcattaattatattttatgtttttt |
4888456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 42777117 - 42777041
Alignment:
| Q |
99 |
taacatattttcaaaatgggtaatacctataaatagttcttgagatggtacaaagtgtgtcctggaatccccatcac |
175 |
Q |
| |
|
||||||| ||||||| || ||||||| ||||| ||| ||||||||||||| |||| |||||||| || ||||||| |
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| T |
42777117 |
taacataatttcaaatgggaaaatacctgtaaatggttattgagatggtacatagtgagtcctggagtcaccatcac |
42777041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 36733064 - 36733020
Alignment:
| Q |
371 |
tcccaccattattaattatttatatgttttttcaaacttcactgt |
415 |
Q |
| |
|
|||||| | |||||||||||||||| ||||||||||||| ||||| |
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| T |
36733064 |
tcccacaactattaattatttatattttttttcaaactttactgt |
36733020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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