View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_1 (Length: 702)
Name: NF18400_low_1
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 33479200 - 33479692
Alignment:
| Q |
13 |
atcatcaagcgaccttatttataattgaagttatatagatagatatacagtcttatatacaattatatctagagttctttaacttaatttaaagctttaa |
112 |
Q |
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| T |
33479200 |
atcatcaaacgaccttatttataattgaagttatatagatagatatacagtcttatatacaattatatctagagttctttaacttaatttaaagctttaa |
33479299 |
T |
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| Q |
113 |
acaaagnnnnnnnnnnnnnnnnnnnatcttatgacaaattagtcttttgtatttaaaagtgtttacattgtaaaaccaattttcattcttaatttatg-t |
211 |
Q |
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| T |
33479300 |
acaaagttttttattttatttttttatcttctgacaaattagtcttttgtatttaaaagtgtttacattgtaaaaccaattttcattcttaatttatggt |
33479399 |
T |
|
| Q |
212 |
cagttgtaaatttttgtacacgttcacttcataatttaatgatctactataaagaatgtttcacaactctgtactataattagactcttgttgacaacaa |
311 |
Q |
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| T |
33479400 |
cagttgtaaatttgtgtacacgttcacttcataatttaatgatctactataaagaatgtttcacaactcagtactataattagactcttgttgacaacaa |
33479499 |
T |
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| Q |
312 |
tagagtggcaattttggagaaaaattgaaaagatcatattctcatttcgatagatttaatattgtaacaatcattatgatataatttagatgttatctcg |
411 |
Q |
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| T |
33479500 |
tagagtggcaattttggagaaaatttgaaaagatcatattctcatttcgatagatttaatattgtaacaatcattatgatataatttagatgttatctcg |
33479599 |
T |
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| Q |
412 |
attaaatgttgatgaaatttatattcttaaatggtcaagagcgaattggtaataataatatgcatagatgaaaaatggaagttgatacatata |
504 |
Q |
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| T |
33479600 |
attaaatgttgatgaaatttatattcttaaatggtcaagagcgaattggtaataataatatgcatagatgaaaaatggaagttgatacatata |
33479692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 33480679 - 33480875
Alignment:
| Q |
491 |
agttgatacatataatttgacaccaaaaaagaagaaaataaaggatctgtctaaaacttaaagttgatacatagtaaggaaagtttgtttaaggacataa |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33480679 |
agttgatacatataatttgacaccaaaaaagaagaaaataaaggatctgtctaaaacttaaagttgatacatagtaaggaaagtttgtttaaggacataa |
33480778 |
T |
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| Q |
591 |
atcgaattctggagttgacgaattaatactcttcataacactgattttcataacaaatggtaatagctatcttctct-ccatcatggctcttctccg |
686 |
Q |
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| T |
33480779 |
atcgaattctggagttgacgaattaatactcttcataacactgattttcataacaaatggtaatagctatcttctctcccatcatggctcttctccg |
33480875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 41194251 - 41194315
Alignment:
| Q |
382 |
tcattatgatataatttagatgttatctcgattaaatgttgatgaaatttatattcttaaatggt |
446 |
Q |
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| T |
41194251 |
tcattatgatgtaatttagatgttatcttgatgaattgaagatgtaatttatctttttaaatggt |
41194315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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