View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18400_low_10 (Length: 430)

Name: NF18400_low_10
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18400_low_10
NF18400_low_10
[»] chr1 (9 HSPs)
chr1 (19-417)||(7873258-7873658)
chr1 (142-292)||(6944091-6944237)
chr1 (87-292)||(7474880-7475079)
chr1 (87-323)||(7487760-7487989)
chr1 (24-302)||(7495172-7495437)
chr1 (326-361)||(6943675-6943710)
chr1 (167-200)||(6840561-6840594)
chr1 (330-366)||(7475497-7475533)
chr1 (19-51)||(7487692-7487724)
[»] chr4 (2 HSPs)
chr4 (253-300)||(31103692-31103739)
chr4 (254-300)||(31097139-31097185)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 7873658 - 7873258
Alignment:
Q  19 ttgtgccatccactttgatccattacccaaatgtttgaaacgacaggagaatcgaagcgattctgtgtaacataagcaagggaacccttaatctcggcaa 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||   ||||||||||||||||||||||||||||||||    
T  7873658 ttgtgccatccactttgatccattacccaaatgttcgaaacgacaggagaatcgaagtgatgctgcacaacataagcaagggaacccttaatctcggcaa 7873559  T
Q  119 catcatcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttgttgcgaaagtcaaagcatatatagaatattcg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7873558 catcatcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttgttgcgaaagtcaaagcatatatagaatattcg 7873459  T
Q  219 caaaaccatcattgctatagtagagtgaattgtctgtaatccaatgataaacgccgttaacaagagtgttatatctagaaggacataggcgtctgacctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7873458 caaaaccatcattgctatagtagagtgaattgtctgtaatccaatgataaacgccgttaacaagagtgttatatctagaaggacataggcgtctgacatt 7873359  T
Q  319 agtaagagtgtattaggttgtcac--atgagagaagggttacatagggttcttttttgtaaaggatcaagagctggctatcagacatgttcatctgcctt 416  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  7873358 agtaagagtgtattaggttgtcacatatgagagaagggttacatagggttcttttttgttaaggatcaagagctggctatcaaacatgttcatctgcctt 7873259  T
Q  417 c 417  Q
    |    
T  7873258 c 7873258  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 6944237 - 6944091
Alignment:
Q  142 tcttcaactgagaaggttggccctctgagttcgtgaaactggttgttgcgaaagtcaaagcatatatagaatattcgcaaaaccatcattgctatagtag 241  Q
    |||||| |||| ||||||||||||||||||| |||||| || | ||||||||||| ||||||||   || ||||| |||| |||||||| || || ||||    
T  6944237 tcttcagctgataaggttggccctctgagttggtgaaattgatcgttgcgaaagttaaagcata---ag-atatttgcaacaccatcatagcgatggtag 6944142  T
Q  242 agtgaattgtctgtaatccaatgataaacgccgttaacaagagtgttatat 292  Q
    | |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  6944141 aatgaattttttgtaatccaatgataaacgccgttaacaagagtgttatat 6944091  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 292
Target Start/End: Original strand, 7474880 - 7475079
Alignment:
Q  87 aacataagcaagggaacccttaatctcggcaacatcatcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttg 186  Q
    |||||||| |||||| || || ||||||||||| ||||| | ||||||    ||||||| |||||||||||||| |||||  |||| |||||| || |||    
T  7474880 aacataagaaagggagcctttgatctcggcaacgtcatcccatagaaagcatcggtctttaactgagaaggttgcccctc--agttggtgaaattgattg 7474977  T
Q  187 ttgcgaaagtcaaagcatatatagaatattcgcaaaaccatcattgctatagtagagtgaattgtctgtaatccaatgataaacgccgttaacaagagtg 286  Q
    || ||||||| ||||||||    | ||||| |||| | ||||||||| |||| ||| || ||||| ||||||||||||||||| ||||||||||||| ||    
T  7474978 tttcgaaagttaaagcata----ggatatttgcaacatcatcattgcgatagaagaatgcattgtttgtaatccaatgataaatgccgttaacaagattg 7475073  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 87 - 323
Target Start/End: Original strand, 7487760 - 7487989
Alignment:
Q  87 aacataagcaagggaacccttaatctcggcaacatcatcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttg 186  Q
    |||||||||||||||||| || |||||||||||| |||| | |  ||| ||||| |  |||  ||||||||||||||||||||||| |||||||||||||    
T  7487760 aacataagcaagggaacctttgatctcggcaacaccatcccatgcaaagttgcgatagtcacatgagaaggttggccctctgagttggtgaaactggttg 7487859  T
Q  187 ttgcgaaagtcaaagcatatatagaatattcgcaaaaccatcattgctatagtagagtgaattgtctgtaatccaatgataaacgccgttaacaagagtg 286  Q
    | ||| ||||||||||    |||||||||| ||||   ||  || || || |  |  |||| ||  | |||||||||||||||||  |||||||||||||    
T  7487860 tcgcggaagtcaaagc----atagaatatttgcaa---caaaatggcgattgccgtatgaactgcttataatccaatgataaacggtgttaacaagagtg 7487952  T
Q  287 ttatatctagaaggacataggcgtctgaccttagtaa 323  Q
    |||||||| || |||||| ||||| ||| ||||||||    
T  7487953 ttatatctggacggacattggcgtgtgatcttagtaa 7487989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 302
Target Start/End: Original strand, 7495172 - 7495437
Alignment:
Q  24 ccatccactttgatccattacccaaatgtttgaaacgacaggagaatcgaagcgattctgtgtaacataagcaagggaacccttaatctcggcaacatca 123  Q
    |||||||||||||||||||||||||||||   | |||||||||| || || | |||||||   ||||||||||||||||||||| ||||||||||||| |    
T  7495172 ccatccactttgatccattacccaaatgtgcaagacgacaggagcattgacgtgattctgcacaacataagcaagggaacccttgatctcggcaacatta 7495271  T
Q  124 tcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttgttgcgaaagtcaaagcatatatagaatattcgcaaaa 223  Q
    || | | ||||  ||||          |||||| |||||||||||||   |||||||| |||| || ||||||||||    | |||||||||| |||  |    
T  7495272 tcccattgaaaactgcg---------agagaagattggccctctgagcgtgtgaaacttgttgctgtgaaagtcaaa----acatagaatatttgcagca 7495358  T
Q  224 ccatcattgctatagtagagtgaattgtctgtaatccaatgataaacgccgttaacaagagtgttatatctagaaggac 302  Q
      |||||||  ||||||   || ||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||    
T  7495359 taatcattgggatagtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggac 7495437  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 6943710 - 6943675
Alignment:
Q  326 gtgtattaggttgtcacatgagagaagggttacata 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  6943710 gtgtattaggttgtcacatgagagaagggttacata 6943675  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 6840561 - 6840594
Alignment:
Q  167 tgagttcgtgaaactggttgttgcgaaagtcaaa 200  Q
    |||||||||||||||| |||||||||||||||||    
T  6840561 tgagttcgtgaaactgattgttgcgaaagtcaaa 6840594  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 7475497 - 7475533
Alignment:
Q  330 attaggttgtcacatgagagaagggttacatagggtt 366  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  7475497 attaggttgtcacgtgagagaagggttatatagggtt 7475533  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 7487692 - 7487724
Alignment:
Q  19 ttgtgccatccactttgatccattacccaaatg 51  Q
    ||||||||||||||||||||||| |||||||||    
T  7487692 ttgtgccatccactttgatccatcacccaaatg 7487724  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 31103692 - 31103739
Alignment:
Q  253 tgtaatccaatgataaacgccgttaacaagagtgttatatctagaagg 300  Q
    ||||||||||| |||||| ||||||||||||||||| ||||| |||||    
T  31103692 tgtaatccaataataaacaccgttaacaagagtgttgtatcttgaagg 31103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 31097139 - 31097185
Alignment:
Q  254 gtaatccaatgataaacgccgttaacaagagtgttatatctagaagg 300  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||    
T  31097139 gtaatccaatgataaacaccgttagcaagagtgttgtatcttgaagg 31097185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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