View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_12 (Length: 400)
Name: NF18400_low_12
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 39263493 - 39263865
Alignment:
| Q |
11 |
atcatcacttcttgagatcctagcaggtaaacacagaccccaaaaagggtctgtgttgttgaaccagaagccagtagacaaatctcagttcagaaagcta |
110 |
Q |
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| T |
39263493 |
atcatcacttcttgagatcctagcaggtaaacacagaccacaaaaagggtctgtgttgttgaaccagaagccagtagacaaatctcagttcagaaagcta |
39263592 |
T |
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| Q |
111 |
tcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaaggctaaagcttcctcaacaac |
210 |
Q |
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| T |
39263593 |
tcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaaggctaaagcttcctcaacaac |
39263692 |
T |
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| Q |
211 |
aacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaattggtgatgatcgagtccgaggtatatcaggcgg |
310 |
Q |
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| T |
39263693 |
aacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaattggtgatgatcgagtccgaggtatatcaggcgg |
39263792 |
T |
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| Q |
311 |
tgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgacgaaccaact |
383 |
Q |
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| T |
39263793 |
tgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgatgaaccaact |
39263865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 90 - 383
Target Start/End: Original strand, 44067299 - 44067598
Alignment:
| Q |
90 |
aaatctcagttcagaaagctatcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaa |
189 |
Q |
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| T |
44067299 |
aaatctcagttcagaaaaatttcagggtatgttacacaaaaagacacccttttccccttacttacagttgaagaaaccatgatgtttagtgcaaaactaa |
44067398 |
T |
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| Q |
190 |
ggctaaagcttcctcaacaacaacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaat------tggtga |
283 |
Q |
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| T |
44067399 |
agttaaatctttctccagaaaaactaagctgtaaggttaagtcattgattcaagagcttggtcttagtcatgtttcaagtactagagtaggagatggaga |
44067498 |
T |
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| Q |
284 |
tgatcgagtccgaggtatatcaggcggtgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgacgaaccaact |
383 |
Q |
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| T |
44067499 |
tgacagggtccgcggaatatccggtggtgagaggcgccgtgtttccattggtgttgaagtcatacatgatccaaaagtgttgattcttgatgaagcaact |
44067598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 32413517 - 32413474
Alignment:
| Q |
297 |
ggtatatcaggcggtgaaaggcgaagagtttctattggtgttga |
340 |
Q |
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| T |
32413517 |
ggtatatcaggcggggaaaggcgtagagtttccattggtgttga |
32413474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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