View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18400_low_14 (Length: 373)

Name: NF18400_low_14
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18400_low_14
NF18400_low_14
[»] chr6 (7 HSPs)
chr6 (18-215)||(28073887-28074084)
chr6 (20-215)||(28016765-28016950)
chr6 (269-359)||(28074138-28074229)
chr6 (19-137)||(27916202-27916321)
chr6 (19-109)||(28034558-28034648)
chr6 (19-71)||(28001225-28001277)
chr6 (311-345)||(28034798-28034832)
[»] chr5 (1 HSPs)
chr5 (149-178)||(12240136-12240165)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 28073887 - 28074084
Alignment:
Q  18 aatataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatcaatatggtttattagaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28073887 aatataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatcaatatggtttattagaaaa 28073986  T
Q  118 tacagaaattagttagacttcacttcagtttgttagttagttaggattttagttagtttgtgggtcttttcctaagctctatagaaagagaaaattgc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28073987 tacagaaattagttagacttcacttcagtttgttagttagttaggattttagttagtttgtgggtcttttcctaagctctatagaaagagaaaattgc 28074084  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 28016765 - 28016950
Alignment:
Q  20 tataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatcaatatggtttattagaaaata 119  Q
    |||||||||||| |||||| ||| ||||||||||||||||||| | ||||||| |||||||| | | |||||||||||||||||||||||||||||| |     
T  28016765 tataatgataacttgcctcgaaa-aagtagcaataatcatctgacctagcctggtagaaactgagaaacatgtttcatcaatatggtttattagaaattg 28016863  T
Q  120 cagaaattagttagacttcacttcagtttgttagttagttaggattttagttagtttgtgggtcttttcctaagctctatagaaagagaaaattgc 215  Q
     |||||||||||||||||||         |||||||| |||  ||| ||||||| |||| | ||||||||| | |||||||||||||| |||||||    
T  28016864 tagaaattagttagacttca---------gttagttaattaacattatagttaggttgttgatcttttcctcatctctatagaaagagcaaattgc 28016950  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 28074138 - 28074229
Alignment:
Q  269 ctctccatcaagctctcaagcatatctaccaacnnnnnnnnn-tctcaagcttattttacctatgagataaatcttcagctgtcatcctttg 359  Q
    |||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28074138 ctctccatcaagctctcaagcatatctaccaacaaaaaaaaaatctcaagcttattttacctatgagataaatcttcagctgtcatcctttg 28074229  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 27916202 - 27916321
Alignment:
Q  19 atataatgataacatgcctcaaaagaagtagcaataatcatctggcatagc-ctgctagaaactaaaatacatgtttcatcaatatggtttattagaaaa 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || ||  |  ||||||   | | ||||||| ||||||||| ||||||||||||     
T  27916202 atataatgataacatgcctcaaaagaagtagcaataataatctggtatggcattaatagaaaaggagaaacatgttccatcaatatagtttattagaaat 27916301  T
Q  118 tacagaaattagttagactt 137  Q
    || |||||||||||||||||    
T  27916302 tatagaaattagttagactt 27916321  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 28034558 - 28034648
Alignment:
Q  19 atataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcctgctagaaactaaaatacatgtttcatcaatatggttta 109  Q
    |||||| |||||||||||||||||||||||||| | |||||||   |||||||  |||||||| | | |||||||||||||||||||||||    
T  28034558 atataacgataacatgcctcaaaagaagtagcagttatcatctaatatagcctcatagaaactgagaaacatgtttcatcaatatggttta 28034648  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 28001225 - 28001277
Alignment:
Q  19 atataatgataacatgcctcaaaagaagtagcaataatcatctggcatagcct 71  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  28001225 atataatgataacatgcctcaaaagaagtagtaataatcatatggcatggcct 28001277  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 28034798 - 28034832
Alignment:
Q  311 tctcaagcttattttacctatgagataaatcttca 345  Q
    |||||||||||||||||||||||||||||||||||    
T  28034798 tctcaagcttattttacctatgagataaatcttca 28034832  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 12240165 - 12240136
Alignment:
Q  149 gttagttagttaggattttagttagtttgt 178  Q
    ||||||||||||||||||||||||||||||    
T  12240165 gttagttagttaggattttagttagtttgt 12240136  T

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