View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_17 (Length: 308)
Name: NF18400_low_17
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 44028579 - 44028864
Alignment:
| Q |
1 |
cctataaattaaacttttatggttttgtgnnnnnnnncttccactggccaatcatcaatgcatgcataatatagtattttgtttgggaagggtattgcat |
100 |
Q |
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| T |
44028579 |
cctataaattaaacttttatggttttgtgtttcttttcttccactggccaatcatcaatgcatgcataatatactattttg----ggaagggtattgcat |
44028674 |
T |
|
| Q |
101 |
caccaataaattaagaataatgtctggtgtccctttaagttaactatctaatactaatagttttaattaatttctgtagtaaattatggccaccaacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44028675 |
caccaataaattaagaataatgtctggtgtccctttaagttaactatctaatactaatagttttaattaatttctgtagtaaattatggccaccaacaca |
44028774 |
T |
|
| Q |
201 |
actctatcaacacctttcaaagacgacaactccgaagaagacaac-aaaagaataaatagatgcacaaaatttgaagtgtcgattagacc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44028775 |
actctatcaacacctttcaaagacgacaactccgaagaagacaacaaaaagaataaatagatgcacaaaatttgaagtgtcgattagacc |
44028864 |
T |
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