View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_18 (Length: 306)
Name: NF18400_low_18
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_18 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 24633780 - 24634068
Alignment:
| Q |
1 |
tttgagaaaatcacataattcggtgcaattatgattgccagtgtggtgtccgtgtcacatagtgacacgcctaattcgaggagtatccgtacttcatagg |
100 |
Q |
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| T |
24633780 |
tttgagaaaatcacataattcggtgcaattatgattgtcagtgtggtgtccgtgtcacatagtgacacacctaattcgaggagtatccgtgcttcatagg |
24633879 |
T |
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| Q |
101 |
actcatagtatataacaagtgaagaaaagaaagatagaaagaagaatcatattcaatatatcagaggaatgacagaatatgcaaaaagacgtatacattg |
200 |
Q |
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| T |
24633880 |
actcatagtatataacaagtgaagaaaagaaagatagaaagaagaatcatattcaatatatcagaggaatgacagaatatgcaaaaagacgtatacattg |
24633979 |
T |
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| Q |
201 |
attgcaaccactaactaacttcataaaaagaaaattgttaaatagcatcaacatttattagaggtgttttctattttctcactagtcat |
289 |
Q |
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| T |
24633980 |
attgcaaccactaactaacttcataaaaagaaaattgttaaatagcatcaacatttattagaggtgttttctattttctcactagtcat |
24634068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 24646551 - 24646637
Alignment:
| Q |
150 |
tattcaatatatcagaggaatgacagaatatgcaaaaagacg--tatacattgattgcaaccactaactaacttcataaaaagaaaa |
234 |
Q |
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| T |
24646551 |
tattcaatatatcagaagaatgacagaatatgcaaaaagacgtatatacattgattgcaaccactaactaacttcatataaaaaaaa |
24646637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 24703817 - 24703881
Alignment:
| Q |
178 |
tatgcaaaaagacgtatacattgattgcaaccactaactaacttcataaaaagaaaattgttaaa |
242 |
Q |
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| T |
24703817 |
tatgtaaaaagatgtatacattgattgcaaccactaactaacttcataaaaagaaaattgttaaa |
24703881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 21243 - 21279
Alignment:
| Q |
64 |
gacacgcctaattcgaggagtatccgtacttcatagg |
100 |
Q |
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| T |
21243 |
gacacgcctaatccgaggagtatccgtgcttcatagg |
21279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 2625994 - 2625958
Alignment:
| Q |
64 |
gacacgcctaattcgaggagtatccgtacttcatagg |
100 |
Q |
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| T |
2625994 |
gacacgcctaattcaaggagtatccgtgcttcatagg |
2625958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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