View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_20 (Length: 303)
Name: NF18400_low_20
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_20 |
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| [»] chr6 (10 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 28074511 - 28074209
Alignment:
| Q |
1 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28074511 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatg |
28074412 |
T |
|
| Q |
101 |
acttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28074411 |
acttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagc |
28074312 |
T |
|
| Q |
201 |
atcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaaccgagttacaaatcaaaggatgacagctgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28074311 |
atcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaaccgagttacaaatcaaaggatgacagctgaa |
28074212 |
T |
|
| Q |
301 |
gat |
303 |
Q |
| |
|
||| |
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|
| T |
28074211 |
gat |
28074209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 27916771 - 27916478
Alignment:
| Q |
1 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatg |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27916771 |
gatatatatgcaatatagagaagtaatagaaaaa-tgaaacaacattttttctatcgacagaaacacaacaaggtaatggaaggaaggaatgaccttatg |
27916673 |
T |
|
| Q |
101 |
acttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagc |
200 |
Q |
| |
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||||||||||| |||||||| |||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
27916672 |
acttgttgaacatgagggctccgcaagagttttgaaaaaagagttgtgacttcttcaatgtctttagcttcgagtgaaaatgcctccacattggttaagc |
27916573 |
T |
|
| Q |
201 |
atcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaaccgagttacaaatcaaaggatgacag |
295 |
Q |
| |
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| ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27916572 |
aatttactgttctgtcactaattaagtcctgtccttgaatctttacttttttaccttctacaagagaaaccgagttacaaatcacaggatgacag |
27916478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 28017375 - 28017083
Alignment:
| Q |
2 |
atatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatga |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
28017375 |
atatatatgcaatatagagaagttatagaaaaaatgaaacaacattttttctatcgacagaaacacaacaaggtaatggtaggaaagaatgaccttatga |
28017276 |
T |
|
| Q |
102 |
cttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagca |
201 |
Q |
| |
|
||||||||||| |||| | || |||| ||||| |||| ||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||| |
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| T |
28017275 |
cttgttgaacgtgaggattttgtaagagtcttgcaaaatgagttgtgacttcttcaatagctttagcgtcgagtaaaaatgcctccacatcggttaagca |
28017176 |
T |
|
| Q |
202 |
tcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaaccgagttacaaatcaaaggatgaca |
294 |
Q |
| |
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| ||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||| || |||||||||||||||||||| | ||||||| |
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|
| T |
28017175 |
ttttactgttctgtcactagttaagccatgtccttgaatctttacttctttaccttctaaaaaagaaaccgagttacaaatcacaagatgaca |
28017083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 28035131 - 28034836
Alignment:
| Q |
1 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatttttt-ctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||| || | || ||||| ||| ||| |||||||||||| |
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|
| T |
28035131 |
gatatatatgcaatgtagagaagttatagaacaaatgaaacaacatttttttctctcgacagatgcaaaacatggtaacggagtgaatgaatgaccttat |
28035032 |
T |
|
| Q |
100 |
gacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaag |
199 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
28035031 |
gacttgttgaacgtgagggctccgcaagaatcttgaaaacagagttgtgacttcctcaatgtctttagcgtcgagtgaaaatgcctccacattggttaag |
28034932 |
T |
|
| Q |
200 |
catcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaaccgagttacaaatcaaaggatgacag |
295 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||| || |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
28034931 |
cattttactgttctgtcactagttaagccatgtcctcgaatctttacttttttaccgtctacaagagaaaccgagttacaaatcacaggatgacag |
28034836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 28047310 - 28047042
Alignment:
| Q |
28 |
agaaaaaatgaaacaacatttttt-ctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
28047310 |
agaaaaaatgaaacaacatttttttctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcgagggctccgcaa |
28047211 |
T |
|
| Q |
127 |
gaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagcatcttactgttctgtcactaattaag |
226 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||| ||||| |
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|
| T |
28047210 |
gaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctgtcactagttaag |
28047111 |
T |
|
| Q |
227 |
tcatgttcttgaatctttacttgcttaccttctacaagagaaaccgagttacaaatcaaaggatgacag |
295 |
Q |
| |
|
| ||| ||||||||||||| | |||| |||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
28047110 |
ccctgtccttgaatctttacatttttactttctacaagagaaaccgagttataaaccacaggatgacag |
28047042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 284
Target Start/End: Complemental strand, 28001689 - 28001495
Alignment:
| Q |
89 |
aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcca |
188 |
Q |
| |
|
||||||||||||||| |||| | |||||||| ||||||||| || |||| |||||| || |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
28001689 |
aatgaccttatgactccttgagtgtgagggctccgcaagaatcctgcaaaaagagttgcgagttcttcaatgtctttaacgcggagtgaaaatgcctcca |
28001590 |
T |
|
| Q |
189 |
aattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaaccgagttacaaatca |
284 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||||| | | |||||| |||||||| ||||||||||| ||||||| || ||||||||||| |
|
|
| T |
28001589 |
cattggttaagcattttactgatctggtactagttaagccccatccttgaagctttacttttttaccttctacgagagaaa-cgtgttacaaatca |
28001495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 28091068 - 28090941
Alignment:
| Q |
89 |
aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcca |
188 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||| |||| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28091068 |
aatgaccttataactccttgaacacgagggctccgcaaaaatcttgcgaagagagttgtgacttcttcaatgtctttagcacgaagtgaaaatgcctcca |
28090969 |
T |
|
| Q |
189 |
aattggttaagcatcttactgttctgtc |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28090968 |
cattggttaagcatcttactgttctgtc |
28090941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28091211 - 28091165
Alignment:
| Q |
1 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
47 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28091211 |
gatatatatgctatgtaaagaagttatagaaaaaatgaaacaacatt |
28091165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28001826 - 28001777
Alignment:
| Q |
1 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttt |
50 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28001826 |
gatacatatgcaaggtagagaagttatagaaaaaatgaaacaatattttt |
28001777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 27917483 - 27917444
Alignment:
| Q |
8 |
atgcaatgtagagaagttatagaaaaaatgaaacaacatt |
47 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27917483 |
atgcaatgtagaaaagttatagaaaaaatgaaacaacatt |
27917444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 1439753 - 1439575
Alignment:
| Q |
93 |
accttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaatt |
192 |
Q |
| |
|
||||||| ||| |||||| ||||||||| |||||||||||| ||| |||| || ||||||||||||||||||||| ||||||||||||||| | ||| |
|
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| T |
1439753 |
accttataactccttgaacacgagggctccgcaagaatcttgcgaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt |
1439654 |
T |
|
| Q |
193 |
ggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaacc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||| |||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
1439653 |
ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc |
1439575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1439897 - 1439851
Alignment:
| Q |
1 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1439897 |
gatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
1439851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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