View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_22 (Length: 292)
Name: NF18400_low_22
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 283
Target Start/End: Original strand, 25894946 - 25895207
Alignment:
| Q |
22 |
actgcatcactgatatttatctgcttcttgtcactaggcttaactggggaaggggatgacggtggttttaaatcctcataactgaaaatttatataccaa |
121 |
Q |
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| T |
25894946 |
actgcatcactgatatttatctgcttcttgtcactaggcttaactggggaaggggatgacggtggttttaaatcctcataactgaaaatttatataccaa |
25895045 |
T |
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| Q |
122 |
attagttatttggcctccgtagtccacataaaaatttactgtcaacaaatattagcaagctggcttacgcagtataaggagaaagcggctgttttgccac |
221 |
Q |
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| T |
25895046 |
attagttatttggcctccgtagtccacataaaaatttactgtcaacaaatattagcaagctggcttacgcagtataaggagaaagcggctgttttgccac |
25895145 |
T |
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| Q |
222 |
tggtttcggttgttctgtttctttctgaggagtaatgctaggtacttctgccacaggttctg |
283 |
Q |
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| T |
25895146 |
tagtttcggttgttctgtttctttctgaggagtgatgctaggtacttctgccactggttctg |
25895207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 25895194 - 25895245
Alignment:
| Q |
216 |
tgccactggtttcggttgttctgtttctttctgaggagtaatgctaggtact |
267 |
Q |
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| T |
25895194 |
tgccactggttctggttgttctgtttctttctgaggggcaatgctaggtact |
25895245 |
T |
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