View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18400_low_24 (Length: 284)
Name: NF18400_low_24
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18400_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 21077996 - 21078275
Alignment:
| Q |
11 |
catcatcatcacgatcatgaagaaacatttttctcatcgttcttgttacgacaaccataaacaacaacaacaaaagaaagaatatgatcac--------- |
101 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21077996 |
catcatcatcacgatcatgaagaaacatttttctcttcgttcttgttacgacaaccataaacaacaacatcaaaagaaagaatatgatcaccatgatgct |
21078095 |
T |
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| Q |
102 |
---gatgagcagaaaaagaatattggttgtttaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggtggcc |
198 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21078096 |
actgatgatcagaaaaagaatattggttgttcaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggcggcc |
21078195 |
T |
|
| Q |
199 |
acaaatcacatcaccaccgctctgatcaccttgttcaacaacctctgaccaagaaacataaacatgatgttcttgatgat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21078196 |
acaaatcacatcaccaccgctctgatcaccttgttcaacaacctctgaccaagaaacagaaacatgatgttcttgatgat |
21078275 |
T |
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