View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18400_low_27 (Length: 256)

Name: NF18400_low_27
Description: NF18400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18400_low_27
NF18400_low_27
[»] chr2 (2 HSPs)
chr2 (13-240)||(26661419-26661646)
chr2 (102-232)||(6049912-6050043)
[»] chr6 (2 HSPs)
chr6 (13-240)||(21481337-21481564)
chr6 (104-240)||(19701161-19701298)
[»] chr7 (2 HSPs)
chr7 (28-226)||(13331531-13331727)
chr7 (28-226)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (28-226)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (73-240)||(10637619-10637786)
chr8 (73-240)||(32717808-32717975)
[»] chr1 (2 HSPs)
chr1 (73-240)||(22893774-22893941)
chr1 (102-232)||(44306129-44306259)
[»] chr3 (1 HSPs)
chr3 (45-226)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (104-240)||(9594-9731)
[»] chr4 (1 HSPs)
chr4 (151-232)||(13893697-13893778)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 26661419 - 26661646
Alignment:
Q  13 aaaatacctcttctacccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661419 aaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgat 26661518  T
Q  113 ctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacat 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661519 ctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacat 26661618  T
Q  213 agatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||||||||||||||    
T  26661619 agatttggtgattgatatcaattctctg 26661646  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 6049912 - 6050043
Alignment:
Q  102 aaacccatgatctttgtg-tgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttcc 200  Q
    |||||||| ||||||||| ||| |||||||| ||||| | || |||| | |||||||||||||| ||||||||| |||| |||||| |   |||||||||    
T  6049912 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcc 6050011  T
Q  201 attactcaacatagatttggtgattgatatca 232  Q
    ||||||||||||||||||||||||||||||||    
T  6050012 attactcaacatagatttggtgattgatatca 6050043  T

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Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 21481337 - 21481564
Alignment:
Q  13 aaaatacctcttctacccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgat 112  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481337 aaaatacctcttctacccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgat 21481436  T
Q  113 ctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  21481437 ctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaacat 21481536  T
Q  213 agatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||||||||||||||    
T  21481537 agatttggtgattgatatcaattctctg 21481564  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 19701161 - 19701298
Alignment:
Q  104 acccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccat 202  Q
    ||||||||||||||| |||| |||||||| ||||| | ||| ||||| ||||||||| |||| ||||||||| |||||||||||||  ||||||||||||    
T  19701161 acccatgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccat 19701260  T
Q  203 tactcaacatagatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||| ||||| |||||| |||||||    
T  19701261 tactcaacatagatttgttgatttatatcatttctctg 19701298  T

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Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 13331727 - 13331531
Alignment:
Q  28 cccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 127  Q
    |||||||||||||||||||||||| |||  |||||| |||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13331727 cccttgccattcccgctattctttctct--gattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13331630  T
Q  128 aactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    |||| |||||  |||| |||||||||||||||||||| ||||||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331629 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 13342642 - 13342446
Alignment:
Q  28 cccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 127  Q
    |||||| ||||||||||||||||| |||  |||||| |||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13342642 cccttgtcattcccgctattctttctct--gattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13342545  T
Q  128 aactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    |||| |||||  |||| |||||||||||||||||||| ||||||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342544 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 5672198 - 5672002
Alignment:
Q  28 cccttgccattcccgctattctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 127  Q
    |||||| ||||||||||||||||| |||  |||||| |||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  5672198 cccttgtcattcccgctattctttctct--gattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 5672101  T
Q  128 aactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    |||| |||||  |||| |||||||||||||||||||| ||||||||| |||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672100 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 10637619 - 10637786
Alignment:
Q  73 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaag 171  Q
    |||||||||||||| |||| || |||||||||||||| |||||||| |||| |||||||| |||||   ||| ||||| |||||||||||||| ||||||    
T  10637619 ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 10637717  T
Q  172 gtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 240  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  10637718 gtatcatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 10637786  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 32717975 - 32717808
Alignment:
Q  73 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaag 171  Q
    |||||||||||||| |||| || |||||||||||||| |||||||| |||| |||||||| |||||   ||| ||||| |||||||||||||| ||||||    
T  32717975 ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 32717877  T
Q  172 gtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 240  Q
    ||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  32717876 gtaccatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 32717808  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 22893774 - 22893941
Alignment:
Q  73 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaag 171  Q
    |||||||||||||| |||| || |||| |||||||||||||||||| |||| |||||||| |||||   ||| ||||| |||||||||||||| ||||||    
T  22893774 ttttcacccatgatcttctata-aaaaggaaacccatgatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 22893872  T
Q  172 gtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctctg 240  Q
    ||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  22893873 gtaacatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctctg 22893941  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 44306129 - 44306259
Alignment:
Q  102 aaacccatgatctttgtg-tgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttcc 200  Q
    |||||||| ||||||||| ||| |||||||| ||||| | || |||| | |||||||||||||| ||||||||| |||| |||| | |   |||||||||    
T  44306129 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttcc 44306227  T
Q  201 attactcaacatagatttggtgattgatatca 232  Q
    ||||||||||||||||||||| ||||||||||    
T  44306228 attactcaacatagatttggtcattgatatca 44306259  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 15762154 - 15761973
Alignment:
Q  45 attctttttctatgattccagctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatcaactacttgccaattgg 144  Q
    ||||||||||| |||||||  |||||||||||||| |||| | |||| ||||||||  | |  ||||||||||| ||| ||||||||| |||| |||| |    
T  15762154 attctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgatctttgtatgttcatcaactatttgctaatttg 15762055  T
Q  145 gtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 226  Q
    | ||||||||||||| |||| ||||| ||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762054 ggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

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Target: scaffold0586 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 9594 - 9731
Alignment:
Q  104 acccatgatctttgt-gtgtgcatcaactacttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccat 202  Q
    ||||||||||||||| |||| |||||||| ||||    ||| ||||| |||||||||||||| ||||||||| |||||||||||||  ||||||||||||    
T  9594 acccatgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccat 9693  T
Q  203 tactcaacatagatttggtgattgatatcaattctctg 240  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  9694 tactcaacatagatttggtgatttatatcatttctctg 9731  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 13893778 - 13893697
Alignment:
Q  151 gatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattgatatca 232  Q
    |||||||||||||| ||||||||| |||| |||||| |   |||||||||||||||||||||||||||||||||||||||||    
T  13893778 gatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgatatca 13893697  T

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